# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fvgA 199 4.03e-01 1fvaA d.58.28.1 39408 1ed8A 449 1.34e+00 1b8jA c.76.1.1 34988 1dabA 539 1.74e+00 1dabA b.80.1.7 28049 1broA 277 1.75e+00 1brt c.69.1.12 34700 1j27A 102 2.52e+00 unknown_sccs -10116 1agi 125 3.16e+00 7rsa d.5.1.1 37303 1dqsA 393 4.66e+00 1dqsA e.22.1.1 43347 1vjw 60 5.20e+00 1fxd d.58.1.4 38991 1j6oA 268 5.31e+00 c.1.9.12 77088 1iy8A 267 6.76e+00 c.2.1.2 83774 1sxjE 354 6.95e+00 1brt 277 7.09e+00 1brt c.69.1.12 34699 1souA 194 7.38e+00 1sr8A 298 7.60e+00 1cv2A 296 8.33e+00 1bn6A c.69.1.8 34680 1bjnA 360 8.58e+00 1bjnA c.67.1.4 34469 1ny6A 267 8.60e+00 c.37.1.20 -7221 2aaiB 262 8.94e+00 1abrB b.42.2.1 25561 b.42.2.1 25562 1g55A 343 9.16e+00 1g55A c.66.1.26 34247 1n9lA 109 9.23e+00 d.110.3.6 85468 1nbwB 117 9.40e+00 c.51.3.2 80396 1mj5A 302 9.68e+00 c.69.1.8 -8326 1hkhA 279 9.73e+00 c.69.1.12 -8342 1fnsA 196 1.02e+01 1auq c.62.1.1 34136 1m3kA 392 1.05e+01 c.95.1.1 78565 c.95.1.1 78566 1ijbA 202 1.06e+01 c.62.1.1 71229 1r72A 211 1.08e+01 unknown_sccs -215 unknown_sccs -5981 1mo9A 523 1.13e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1qflA 389 1.15e+01 1afwA c.95.1.1 35908 c.95.1.1 35909 1m4tA 392 1.15e+01 c.95.1.1 78617 c.95.1.1 78618 1f8vA 355 1.16e+01 2bbvA b.121.4.4 23329 4eugA 229 1.24e+01 3eugA c.18.1.1 31019 1nv8A 284 1.31e+01 c.66.1.30 86224 1uayA 242 1.36e+01 c.2.1.2 88390 1jj2L 194 1.36e+01 1ffkI d.12.1.2 63097 1vizA 240 1.37e+01 c.1.4.1 -5212 1ufoA 238 1.43e+01 unknown_sccs -8303 1o5oA 221 1.73e+01 c.61.1.1 -7954 1cxc 124 1.74e+01 1ycc a.3.1.1 15890 1rkd 309 1.82e+01 1rkd c.72.1.1 34928 2dorA 311 1.97e+01 2dorA c.1.4.1 28593 1e9lA 377 2.13e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1dorA 311 2.16e+01 2dorA c.1.4.1 28595 1euvA 221 2.17e+01 1euvA d.3.1.7 37133 1t1gA 364 2.29e+01 1t0iA 191 2.32e+01 1akz 223 2.37e+01 3eugA c.18.1.1 31007 1bg6 359 2.41e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1qh8A 478 2.43e+01 1qguA c.92.2.3 35633 4pgaA 337 2.45e+01 4pgaA c.88.1.1 35565 1uf3A 228 2.52e+01 unknown_sccs -11463 1lkdA 297 2.57e+01 d.32.1.3 78059 d.32.1.3 78060 1gq6A 313 2.59e+01 c.42.1.1 70341 1mtzA 293 2.60e+01 c.69.1.7 79467 1eyqA 222 2.65e+01 1eypA d.36.1.1 38534 1m6dA 214 2.79e+01 d.3.1.1 84849 1nhs 447 2.81e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1k7hA 476 2.84e+01 c.76.1.1 72101 1gt91 357 2.85e+01 1g8lA 411 2.93e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1pqnA 127 2.95e+01 c.47.1.8 -7479 1o5zA 442 3.12e+01 c.59.1.2 -7939 c.72.2.2 -8418 1iae 200 3.19e+01 1iae d.92.1.8 40311 1kqpA 271 3.22e+01 c.26.2.1 72883 1iab 200 3.29e+01 1iae d.92.1.8 40312 1hkkA 364 3.41e+01 c.1.8.5 -5384 d.26.3.1 -9506 1hwxA 501 3.46e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1eemA 241 3.47e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1ro2A 216 3.52e+01 unknown_sccs -11391 1lyqA 104 3.52e+01 b.1.18.17 78302 1to6A 371 3.54e+01 1ih8A 271 3.56e+01 2nsyA c.26.2.1 62377 1jo0A 98 3.59e+01 d.68.4.1 77140 1bxkA 355 3.59e+01 1bxkA c.2.1.2 29803 1fs7A 485 3.59e+01 1qdbA a.138.1.3 19691 1aym3 238 3.59e+01 1aym3 1v2dA 381 3.63e+01 1han 297 3.70e+01 1han d.32.1.3 38506 d.32.1.3 38507 1c4xA 285 3.81e+01 1c4xA c.69.1.10 34684 1kq3A 376 3.86e+01 e.22.1.2 68790 8rucI 123 3.89e+01 1rboC d.73.1.1 39629 1nhp 447 3.97e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1fxmA 302 3.97e+01 1taxA 1iupA 282 3.99e+01 c.69.1.10 76815