# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dabA	539	5.52e-01	1dabA	b.80.1.7	28049
1ny6A	267	1.50e+00		c.37.1.20	-7221
1twdA	256	2.78e+00			
1o7dE	126	3.10e+00			
1fvgA	199	3.78e+00	1fvaA	d.58.28.1	39408
1vjw	60	3.99e+00	1fxd	d.58.1.4	38991
1khqA	212	4.08e+00		d.3.1.1	-8868
1ppn	212	5.13e+00	1cs8A	d.3.1.1	37004
1m6dA	214	5.20e+00		d.3.1.1	84849
1deuA	277	5.27e+00	1theB	d.3.1.1	37085
1rl6A	177	6.03e+00	1rl6A	d.141.1.1	41473
				d.141.1.1	41474
1svpA	161	6.58e+00	1svpA	b.47.1.3	26384
1qtwA	285	6.68e+00	1qumA	c.1.15.1	29392
1uz5A	402	7.93e+00		b.85.6.1	-5029
				b.103.1.1	-5069
				c.57.1.2	-7902
1ii7A	333	8.07e+00	1ii7A	d.159.1.4	62415
1o6yA	299	8.18e+00		d.144.1.7	81106
1agi	125	8.40e+00	7rsa	d.5.1.1	37303
1ejxA	100	9.32e+00		d.8.1.1	83182
1o5uA	101	9.55e+00		b.82.1.8	-4845
1wkt	88	1.07e+01	1wkt	b.11.1.2	23630
1dlwA	116	1.08e+01	1dlyA	a.1.1.1	14982
1jj2L	194	1.19e+01	1ffkI	d.12.1.2	63097
1e9lA	377	1.22e+01	1e9lA	c.1.8.5	59395
				d.26.3.1	59396
1iae	200	1.42e+01	1iae	d.92.1.8	40311
1g8lA	411	1.43e+01	1g8lA	b.85.6.1	60365
				b.103.1.1	60366
				c.57.1.2	60367
1yal	218	1.52e+01	1cs8A	d.3.1.1	37025
1pylA	97	1.76e+01			
1iab	200	1.81e+01	1iae	d.92.1.8	40312
1nmeA	146	1.88e+01		c.17.1.1	85874
8pchA	220	1.98e+01	1cs8A		
1ihcA	188	2.17e+01	1di6A	c.57.1.1	62379
1jljA	189	2.18e+01		c.57.1.1	63169
1azsA	220	2.21e+01	1azsA	d.58.29.1	39416
1i4uA	181	2.30e+01		b.60.1.1	61732
4ubpA	101	2.32e+01	1ubpA	d.8.1.1	37352
1f9zA	135	2.36e+01	1qipA	d.32.1.1	38484
1fa8A	135	2.38e+01	1qipA	d.32.1.1	38486
1gmyA	261	2.44e+01		d.3.1.1	76236
1u13A	455	2.53e+01			
1j27A	102	2.67e+01		unknown_sccs	-10116
1poiA	317	2.67e+01	1poiA	unknown_sccs	34153
1nfjA	89	2.77e+01		d.68.6.1	-10285
1nbwB	117	2.89e+01		c.51.3.2	80396
1qxrA	189	2.99e+01		b.82.1.7	-4834
1h5zA	455	3.17e+01		a.104.1.1	-1456
1uf3A	228	3.21e+01		unknown_sccs	-11463
1exmA	405	3.31e+01	1efcA	b.43.3.1	25696
				b.44.1.1	25736
				c.37.1.8	32131
1ru8A	232	3.37e+01		c.26.2.1	-6635
1s72M	194	3.41e+01			
4eugA	229	3.51e+01	3eugA	c.18.1.1	31019
1g55A	343	3.51e+01	1g55A	c.66.1.26	34247
1diiC	80	3.60e+01	1diiC	a.3.1.1	15925
1plzA	189	3.63e+01		b.82.1.7	88160
1e9xA	455	3.77e+01	1ea1A	a.104.1.1	18969
1iuhA	198	3.90e+01		d.61.1.2	83711
1ha3A	405	3.92e+01	1efcA	b.43.3.1	60869
				b.44.1.1	60870
				c.37.1.8	60871