# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fvgA 199 9.73e-02 1fvaA d.58.28.1 39408 1ed8A 449 5.21e-01 1b8jA c.76.1.1 34988 1j6oA 268 8.74e-01 c.1.9.12 77088 1nbwB 117 1.89e+00 c.51.3.2 80396 1dabA 539 2.02e+00 1dabA b.80.1.7 28049 1j27A 102 2.27e+00 unknown_sccs -10116 1dqsA 393 2.68e+00 1dqsA e.22.1.1 43347 1broA 277 2.72e+00 1brt c.69.1.12 34700 1ny6A 267 3.07e+00 c.37.1.20 -7221 1qflA 389 3.75e+00 1afwA c.95.1.1 35908 c.95.1.1 35909 1m6dA 214 3.84e+00 d.3.1.1 84849 1bg6 359 4.39e+00 1bg6 a.100.1.5 18810 c.2.1.6 30214 1olrA 224 4.68e+00 b.29.1.11 -3489 1brt 277 5.24e+00 1brt c.69.1.12 34699 1cxc 124 5.63e+00 1ycc a.3.1.1 15890 1rkd 309 5.72e+00 1rkd c.72.1.1 34928 2cxbA 124 5.90e+00 1ycc a.3.1.1 15891 1m3kA 392 5.93e+00 c.95.1.1 78565 c.95.1.1 78566 1agi 125 6.05e+00 7rsa d.5.1.1 37303 1jkmB 361 6.07e+00 1jkmA c.69.1.2 34634 1m4tA 392 6.32e+00 c.95.1.1 78617 c.95.1.1 78618 2aaiB 262 6.52e+00 1abrB b.42.2.1 25561 b.42.2.1 25562 1cv2A 296 6.96e+00 1bn6A c.69.1.8 34680 1qtwA 285 7.00e+00 1qumA c.1.15.1 29392 1r72A 211 7.26e+00 unknown_sccs -215 unknown_sccs -5981 1jbwA 428 7.29e+00 c.59.1.2 62860 c.72.2.2 62861 1uayA 242 7.55e+00 c.2.1.2 88390 1g6gA 127 7.64e+00 1g6gA b.26.1.2 23916 1hkhA 279 8.16e+00 c.69.1.12 -8342 8rucI 123 8.70e+00 1rboC d.73.1.1 39629 1mo9A 523 8.90e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1mj5A 302 9.01e+00 c.69.1.8 -8326 1fgs 428 9.28e+00 1fgs c.59.1.2 33959 c.72.2.2 34962 1iy8A 267 9.42e+00 c.2.1.2 83774 1o5oA 221 9.49e+00 c.61.1.1 -7954 1vizA 240 9.58e+00 c.1.4.1 -5212 1sur 215 1.00e+01 1sur c.26.2.2 31620 1uf3A 228 1.01e+01 unknown_sccs -11463 1d2fA 390 1.05e+01 1d2fA c.67.1.3 34411 1atzA 189 1.15e+01 1atzA c.62.1.1 34132 1jj2L 194 1.16e+01 1ffkI d.12.1.2 63097 3pmgA 561 1.16e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1twdA 256 1.25e+01 1g8lA 411 1.28e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1msc 129 1.29e+01 1msc d.85.1.1 40039 1fnsA 196 1.31e+01 1auq c.62.1.1 34136 1souA 194 1.33e+01 1sr8A 298 1.41e+01 1vjw 60 1.49e+01 1fxd d.58.1.4 38991 1j5xA 342 1.50e+01 c.80.1.1 71591 1khqA 212 1.51e+01 d.3.1.1 -8868 1o7jA 327 1.62e+01 c.88.1.1 81140 1nmeA 146 1.65e+01 c.17.1.1 85874 1ijbA 202 1.65e+01 c.62.1.1 71229 1jeoA 180 1.68e+01 c.80.1.3 66611 1iab 200 1.68e+01 1iae d.92.1.8 40312 1o5zA 442 1.72e+01 c.59.1.2 -7939 c.72.2.2 -8418 8pchA 220 1.74e+01 1cs8A 4pfk 319 1.77e+01 3pfk c.89.1.1 35582 1jubA 311 1.80e+01 c.1.4.1 -5188 1eyqA 222 1.83e+01 1eypA d.36.1.1 38534 2dorA 311 1.85e+01 2dorA c.1.4.1 28593 1lgpA 116 1.85e+01 b.26.1.2 73890 1p0fA 373 1.87e+01 b.35.1.2 87642 c.2.1.1 87643 1qhxA 178 1.93e+01 1qhsA c.37.1.3 31936 1iae 200 1.94e+01 1iae d.92.1.8 40311 1gmyA 261 1.98e+01 d.3.1.1 76236 1gq6A 313 2.00e+01 c.42.1.1 70341 1f8vA 355 2.01e+01 2bbvA b.121.4.4 23329 1dqiA 124 2.03e+01 1do6A b.1.13.1 22357 1lkdA 297 2.08e+01 d.32.1.3 78059 d.32.1.3 78060 1hwxA 501 2.09e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1do6A 124 2.11e+01 1do6A b.1.13.1 22361 1s72M 194 2.23e+01 1q3oA 109 2.29e+01 b.36.1.1 -3776 1t0iA 191 2.35e+01 1sxjE 354 2.37e+01 1bjnA 360 2.38e+01 1bjnA c.67.1.4 34469 1theA 260 2.42e+01 1theB d.3.1.1 37056 1ufoA 238 2.44e+01 unknown_sccs -8303 1euvA 221 2.49e+01 1euvA d.3.1.7 37133 1cbf 285 2.53e+01 1cbf c.90.1.1 35587 1ppn 212 2.69e+01 1cs8A d.3.1.1 37004 4eugA 229 2.72e+01 3eugA c.18.1.1 31019 1t1gA 364 2.73e+01 1deuA 277 2.77e+01 1theB d.3.1.1 37085 1k7hA 476 2.81e+01 c.76.1.1 72101 1svpA 161 2.90e+01 1svpA b.47.1.3 26384 1to6A 371 2.91e+01 1h6kZ 98 2.91e+01 d.58.7.1 60686 1dorA 311 2.92e+01 2dorA c.1.4.1 28595 1gt91 357 2.97e+01 1ic6A 279 2.99e+01 1gci c.41.1.1 62257 1tdhA 364 3.09e+01 1yal 218 3.10e+01 1cs8A d.3.1.1 37025 1ih8A 271 3.12e+01 2nsyA c.26.2.1 62377 1lyqA 104 3.12e+01 b.1.18.17 78302 1p3dA 475 3.14e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1plzA 189 3.18e+01 b.82.1.7 88160 1fzrA 138 3.19e+01 1fzrA c.52.1.17 33336 2ae2A 260 3.21e+01 1bdb c.2.1.2 29945 1kqpA 271 3.22e+01 c.26.2.1 72883 1qgoA 264 3.23e+01 1qgoA c.92.1.2 35596 1m4jA 142 3.26e+01 d.109.1.2 78602 1ofuA 320 3.31e+01 c.32.1.1 86972 d.79.2.1 86973 1m1nA 491 3.32e+01 c.92.2.3 78417 1ta3B 303 3.32e+01 1qxrA 189 3.33e+01 b.82.1.7 -4834 1guiA 155 3.37e+01 b.18.1.14 76351 1han 297 3.43e+01 1han d.32.1.3 38506 d.32.1.3 38507 1q0rA 298 3.43e+01 unknown_sccs -8330 1vkfA 188 3.56e+01 1jqnA 883 3.81e+01 c.1.12.3 77159 1aym3 238 3.85e+01 1aym3 1e9lA 377 3.87e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 2ohxA 374 3.91e+01 2ohxA b.35.1.2 24669 c.2.1.1 29685 2arcA 164 3.93e+01 2arcA b.82.4.1 28148 1qxoA 388 3.94e+01 unknown_sccs -11161