# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1k6dA	220	2.45e-01		unknown_sccs	72082
1a7cA	379	5.11e-01	1sek	e.1.1.1	42660
1lj5A	379	8.55e-01		e.1.1.1	73928
1jsdA	319	9.80e-01		b.19.1.2	63258
1tqyA	424	2.88e+00			
2bpa1	426	3.86e+00	2bpa1		
1kopA	223	5.89e+00	2cba	b.74.1.1	27966
2bc2A	227	6.06e+00	1a7tA	d.157.1.1	42031
1koqA	253	7.01e+00	2cba	b.74.1.1	27964
1mqoA	227	7.17e+00			
1mvfA	135	8.96e+00		b.1.1.1	85141
1usuA	260	1.02e+01		unknown_sccs	-9045
1nykA	165	1.04e+01		b.33.1.1	86408
1q6cA	495	1.10e+01		c.1.8.1	-5300
3tgl	269	1.19e+01	3tgl	c.69.1.17	34733
1eso	154	1.28e+01	1yaiA	b.1.8.1	22293
1h6dA	433	1.29e+01		c.2.1.3	65656
				d.81.1.5	65657
2arcA	164	1.29e+01	2arcA	b.82.4.1	28148
1byb	495	1.30e+01	1byb	c.1.8.1	28790
1v3hA	495	1.31e+01			
1vjeA	166	1.36e+01		d.185.1.2	-10261
1d4tA	104	1.37e+01	1d4tA	d.93.1.1	40537
1me4A	215	1.40e+01		d.3.1.1	79023
1h2wA	710	1.49e+01		b.69.7.1	76596
				c.69.1.4	76597
1fjgL	135	1.49e+01	1fjfL	b.40.4.5	25346
1rdo1	113	1.53e+01	1rtm1		
1b5eA	246	1.56e+01	1b5eA	d.117.1.1	41056
1qfmA	710	1.56e+01	1qfmA	b.69.7.1	27673
				c.69.1.4	34641
1vf7A	369	1.58e+01			
1ofcX	304	1.72e+01		a.4.1.3	-195
				unknown_sccs	-199
				unknown_sccs	-978
1lpbA	95	1.77e+01	1lpbA	g.3.10.1	44189
				g.3.10.1	44190
1j71A	334	1.79e+01	1eagA	b.50.1.2	62669
1t0bA	252	1.81e+01			
1rdj1	113	1.86e+01	1rtm1		
1p8kZ	254	1.90e+01		d.95.2.1	-10648
				d.95.2.1	-10649
1innA	166	1.93e+01	1j98A	d.185.1.2	62608
1ocxA	182	1.94e+01		b.81.1.3	86814
1dvjA	246	1.99e+01	1dvjA	c.1.2.3	28546
1f2aA	215	2.06e+01	1cs8A	d.3.1.1	37040
1ermA	263	2.16e+01	1btl	e.3.1.1	42690
2hpaA	342	2.40e+01	1cviA	c.60.1.2	33985
1c4kA	730	2.41e+01	1ordA	c.23.1.4	31273
				c.67.1.5	34502
				d.125.1.1	41123
1fknA	391	2.43e+01	1fknA	b.50.1.2	26879
1nvpB	57	2.61e+01		a.32.1.1	-779
1oh4A	179	2.76e+01		b.18.1.18	-3123
1r1dA	247	2.84e+01		unknown_sccs	-8335
1n3jA	119	2.92e+01		b.85.7.2	79963
1i1iP	681	2.99e+01	1i1iP	d.92.1.5	40297
1oh0A	131	3.41e+01		d.17.4.3	87004
1f46A	140	3.61e+01	1f46A	d.129.4.1	59643
1k3pA	426	3.82e+01		a.103.1.1	77237
1sgzA	389	3.86e+01		b.50.1.2	-4301
1amm	174	3.96e+01	1amm	b.11.1.1	23587
				b.11.1.1	23588
1dy9A	187	3.99e+01	1jxpA	b.47.1.3	26400