# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ucsA 64 6.57e-05 b.85.1.1 88466 1hg7A 66 2.30e-03 1msi b.85.1.1 28280 1lfaA 187 1.09e+00 1ido c.62.1.1 34122 1mjnA 179 1.22e+00 c.62.1.1 79210 1jhgA 101 1.60e+00 1jhgA a.4.12.1 19009 1vjeA 166 1.74e+00 d.185.1.2 -10261 1innA 166 1.75e+00 1j98A d.185.1.2 62608 1uurA 473 1.86e+00 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1fr2B 134 2.20e+00 d.4.1.1 83257 1giqA 413 2.47e+00 d.166.1.1 76224 d.166.1.1 76225 1ks9A 291 3.87e+00 a.100.1.7 68857 c.2.1.6 68858 1emvB 134 3.97e+00 1bxiB d.4.1.1 37135 1aym3 238 4.13e+00 1aym3 1jhfA 202 4.59e+00 a.4.5.2 63057 b.87.1.1 63058 1ml9A 302 4.62e+00 b.85.7.1 79282 1lrwA 600 5.48e+00 b.70.1.1 -4629 1jsxA 207 5.59e+00 c.66.1.20 71846 1p0hA 318 7.62e+00 d.108.1.1 -10802 1jqlB 140 7.69e+00 c.37.1.20 63234 1js8A 394 8.07e+00 a.86.1.1 67219 b.112.1.1 67220 1hkkA 364 8.17e+00 c.1.8.5 -5384 d.26.3.1 -9506 1amx 180 8.75e+00 1amx b.2.3.1 22410 1k94A 165 8.95e+00 a.39.1.8 68333 1f9yA 158 9.09e+00 d.58.30.1 83249 1rh5B 74 9.18e+00 unknown_sccs -12198 1go4A 205 9.25e+00 d.135.1.1 70292 1eqoA 158 9.53e+00 1hka 1o22A 170 1.02e+01 d.238.1.1 86557 1lj5A 379 1.06e+01 e.1.1.1 73928 1a7cA 379 1.06e+01 1sek e.1.1.1 42660 1f4qA 165 1.12e+01 1alvA a.39.1.8 17360 1o5oA 221 1.12e+01 c.61.1.1 -7954 1f1uA 323 1.16e+01 d.32.1.3 83200 d.32.1.3 83201 1n7kA 234 1.17e+01 c.1.10.1 85374 1cl8A 276 1.19e+01 1ckqA c.52.1.1 33230 1up8A 598 1.28e+01 a.111.1.2 -1480 1eu1A 780 1.30e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1omrA 201 1.32e+01 a.39.1.5 -854 1kyqA 274 1.32e+01 c.2.1.11 73281 e.37.1.1 73282 1i1dA 161 1.35e+01 1i21A d.108.1.1 61526 1r0wA 286 1.38e+01 c.37.1.12 -7158 1f1xA 322 1.38e+01 d.32.1.3 83208 d.32.1.3 83209 1go3F 107 1.48e+01 a.60.8.2 65407 1i12A 160 1.50e+01 1i21A d.108.1.1 61515 1o08A 221 1.55e+01 c.108.1.6 86525 1n83A 270 1.56e+01 a.123.1.1 80276 1avsA 90 1.57e+01 1cll a.39.1.5 17226 1ivnA 190 1.57e+01 c.23.10.5 83719 1a7j 290 1.59e+01 1a7j c.37.1.6 31952 2sas 185 1.68e+01 2sas a.39.1.5 17258 1l7dA 384 1.70e+01 c.2.1.4 77774 c.23.12.2 77775 1dkgA 197 1.71e+01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1pne 140 1.74e+01 1pne d.110.1.1 40866 1pcfA 66 1.76e+01 1pcfA d.18.1.1 38142 1eb7A 323 1.80e+01 1eb7A a.3.1.5 59404 a.3.1.5 59405 1qwiA 143 1.87e+01 d.227.1.1 -11183 1v5xA 203 1.89e+01 c.1.2.4 -5169 1otjA 283 1.90e+01 b.82.2.5 -4893 1jx4A 352 1.92e+01 unknown_sccs -10188 unknown_sccs -11898 2fhi 147 1.96e+01 1fit d.13.1.1 37505 1iw7C 1119 1.97e+01 e.29.1.1 71474 1jyoA 130 2.00e+01 d.198.1.1 67483 1ido 192 2.01e+01 1ido c.62.1.1 34139 1qgeE 97 2.04e+01 1cvl 1v04A 355 2.07e+01 unknown_sccs -4592 1ew6A 137 2.08e+01 1ewaA a.1.1.2 15637 1dfoA 417 2.10e+01 1bj4A c.67.1.4 34480 1c0pA 363 2.13e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1gotB 340 2.14e+01 1tbgA b.69.4.1 27648 1cwpA 190 2.16e+01 1cwpA b.121.4.5 23305 1f8gA 384 2.23e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1nthA 458 2.29e+01 c.1.25.1 80730 1k2yX 463 2.29e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1oahA 519 2.37e+01 a.138.1.3 86736 1s96A 219 2.45e+01 c.37.1.1 -6972 1pc6A 146 2.60e+01 unknown_sccs -11739 1m33A 258 2.64e+01 c.69.1.26 78514 1me4A 215 2.68e+01 d.3.1.1 79023 1ep0A 185 2.69e+01 1dzrA b.82.1.1 28080 1r62A 160 2.76e+01 1mf7A 194 2.79e+01 c.62.1.1 84937 1rqlA 267 2.81e+01 c.108.1.3 -6814 1umdA 367 2.88e+01 c.36.1.11 -6969 1f2aA 215 2.94e+01 1cs8A d.3.1.1 37040 1fthA 122 2.95e+01 d.150.1.2 60028 1hdhA 536 2.98e+01 c.76.1.2 65805 1fit 147 2.98e+01 1fit d.13.1.1 37499 1jf8A 131 3.05e+01 c.44.1.1 66621 3ullA 132 3.10e+01 3ullA b.40.4.3 25282 1ajsA 412 3.10e+01 1ajsA c.67.1.1 34276 1ljoA 77 3.10e+01 b.38.1.1 73941 1kqfA 1015 3.12e+01 b.52.2.2 72871 c.81.1.1 72872 1q4rA 112 3.16e+01 d.58.4.4 -9943 1nq7A 244 3.16e+01 a.123.1.1 -1682 1jj2U 70 3.18e+01 1ffkS a.2.2.1 63106 1s72V 71 3.18e+01 1dik 874 3.26e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1r31A 428 3.32e+01 d.58.20.1 -10108 d.179.1.1 -11716 1q40B 219 3.40e+01 d.17.4.2 -9287 1p65A 73 3.42e+01 unknown_sccs -10331 1c1dA 355 3.43e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1seiA 130 3.53e+01 1seiA d.140.1.1 41463 1ct5A 256 3.54e+01 1ct5A c.1.6.2 28663 1dpgA 485 3.66e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1o0xA 262 3.76e+01 d.127.1.1 80755 1bo4A 168 3.80e+01 1bo4A d.108.1.1 40798 1f46A 140 3.82e+01 1f46A d.129.4.1 59643 1o7fA 469 3.86e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1ee8A 266 3.96e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1rwyA 109 3.98e+01 a.39.1.4 -825 1mkaA 171 4.00e+01 1mkaA d.38.1.2 38543