# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ucsA 64 9.33e-04 b.85.1.1 88466 1hg7A 66 8.07e-03 1msi b.85.1.1 28280 1aohA 147 1.92e+00 1aohA b.2.2.2 22401 1ten 90 3.00e+00 1ten b.1.2.1 21990 1lfaA 187 3.93e+00 1ido c.62.1.1 34122 1ithA 141 4.12e+00 1ithA a.1.1.2 15623 1q3oA 109 4.71e+00 b.36.1.1 -3776 1k94A 165 5.86e+00 a.39.1.8 68333 2sas 185 7.34e+00 2sas a.39.1.5 17258 1mjnA 179 7.36e+00 c.62.1.1 79210 1f4qA 165 7.62e+00 1alvA a.39.1.8 17360 1alvA 173 7.97e+00 1alvA a.39.1.8 17370 3ullA 132 9.04e+00 3ullA b.40.4.3 25282 1mgtA 174 9.52e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1a8h 500 9.65e+00 1a8h a.27.1.1 16922 c.26.1.1 31589 1emvB 134 9.69e+00 1bxiB d.4.1.1 37135 1ks9A 291 1.01e+01 a.100.1.7 68857 c.2.1.6 68858 1plq 258 1.34e+01 1plq d.131.1.2 41388 d.131.1.2 41389 1fr2B 134 1.48e+01 d.4.1.1 83257 1ml9A 302 1.67e+01 b.85.7.1 79282 1jyoA 130 1.74e+01 d.198.1.1 67483 1el6A 219 1.79e+01 1el6B d.182.1.1 42606 1vjeA 166 1.84e+01 d.185.1.2 -10261 1ahxA 396 2.14e+01 1ajsA c.67.1.1 34293 1sfe 180 2.15e+01 1sfe a.4.2.1 16073 c.55.7.1 33748 1k0hA 117 2.21e+01 b.106.1.2 71975 1o5oA 221 2.44e+01 c.61.1.1 -7954 1innA 166 2.46e+01 1j98A d.185.1.2 62608 1qisA 396 2.59e+01 1ajsA c.67.1.1 34284 1jhgA 101 2.70e+01 1jhgA a.4.12.1 19009 1m45A 148 2.74e+01 a.39.1.5 78598 1ars 396 2.79e+01 1ajsA c.67.1.1 34287 1amx 180 2.90e+01 1amx b.2.3.1 22410 1c3yA 108 3.12e+01 1c3yA a.39.2.1 17387 1iuhA 198 3.21e+01 d.61.1.2 83711 1mqvA 125 3.23e+01 a.24.3.2 79415 1az9 457 3.36e+01 1az9 c.55.2.1 33547 d.127.1.1 41164 1qghA 156 3.41e+01 1qghA a.25.1.1 16728 1mp9A 198 3.45e+01 a.74.1.2 -1127 a.74.1.2 -1128 1qv1A 195 3.50e+01 a.39.1.5 -830 1f6vA 91 3.62e+01 1f6vA a.49.1.1 17791 1idpA 172 3.67e+01 d.17.4.1 83685 1kay 381 3.72e+01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1br1B 150 3.78e+01 1wdcC a.39.1.5 17309 1ryt 190 3.79e+01 1ryt a.25.1.1 16646 g.41.5.1 45245 1neq 74 3.80e+01 1neq a.35.1.2 17063 1vpi 122 3.80e+01 1poa a.133.1.2 19559 1bupA 386 3.90e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1up8A 598 3.94e+01 a.111.1.2 -1480 1oh0A 131 3.96e+01 d.17.4.3 87004