# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h2kA 349 1.42e-29 b.82.2.6 76572 1fi2A 201 3.40e-03 1fi2A b.82.1.2 59845 1qwrA 319 6.34e-03 2arcA 164 2.29e-02 2arcA b.82.4.1 28148 1o4tA 133 3.11e-02 b.82.1.9 86622 1dgwA 178 3.65e-02 1dgwA b.82.1.2 28090 1a8s 273 3.91e-02 1brt c.69.1.12 34710 1o1yA 239 6.68e-02 c.23.16.1 86554 1lr5A 163 8.94e-02 b.82.1.2 74215 1knwA 425 1.17e-01 1qhoA 686 1.42e-01 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1az9 457 2.30e-01 1az9 c.55.2.1 33547 d.127.1.1 41164 1plzA 189 2.58e-01 b.82.1.7 88160 1e5rA 290 2.81e-01 1e5rA b.82.2.4 59276 1qxrA 189 3.60e-01 1fiy 883 4.50e-01 1fiy c.1.12.3 29307 1htqA 477 5.99e-01 d.15.9.1 71035 d.128.1.1 71036 1d2eA 397 6.09e-01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1uok 558 6.11e-01 1uok b.71.1.1 27801 c.1.8.1 28788 1od5A 492 7.89e-01 b.82.1.2 86832 b.82.1.2 86833 1nrfA 262 9.10e-01 1jqnA 883 1.33e+00 c.1.12.3 77159 2phlA 397 1.37e+00 1dgwA b.82.1.2 28082 b.82.1.2 28083 1m2kA 249 1.63e+00 c.31.1.5 84754 1j58A 385 1.74e+00 b.82.1.2 71531 1ojxA 263 1.98e+00 1kyqA 274 2.04e+00 c.2.1.11 73281 e.37.1.1 73282 1e8gA 560 2.30e+00 1qltA d.58.32.1 39455 d.145.1.1 41718 1idk 359 2.37e+00 1qcxA b.80.1.2 28025 1fbnA 230 2.56e+00 1fbnA c.66.1.3 34181 1ko3A 230 2.56e+00 1g8sA 230 2.59e+00 1nxmA 197 2.61e+00 b.82.1.1 86385 1d2fA 390 2.78e+00 1d2fA c.67.1.3 34411 1j8fA 323 3.42e+00 1j8fA c.31.1.5 62738 1mrzA 293 3.76e+00 1d3cA 686 3.78e+00 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1a8h 500 4.71e+00 1a8h a.27.1.1 16922 c.26.1.1 31589 1o2dA 371 4.95e+00 e.22.1.2 86591 1ptvA 321 5.01e+00 1pty c.45.1.2 32665 1uyrA 737 5.46e+00 1exmA 405 5.58e+00 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1mkeA 152 5.75e+00 b.55.1.4 79231 1pjcA 361 6.77e+00 1sayA c.2.1.4 30101 c.23.12.2 31361 1ha3A 405 6.87e+00 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1mo9A 523 7.01e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1gdeA 389 7.01e+00 c.67.1.1 60456 1dgwY 93 7.55e+00 1caxB 1jm6A 407 7.64e+00 a.29.5.1 66876 d.122.1.4 66877 1mdbA 539 7.66e+00 e.23.1.1 79008 1e7uA 961 8.20e+00 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1ptmA 329 8.28e+00 1vpt 348 8.42e+00 3mag c.66.1.25 34207 1j5sA 463 8.79e+00 c.1.9.8 71580 1pamA 686 9.17e+00 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1pa1A 310 9.41e+00 1oboA 169 9.96e+00 c.23.5.1 86776 1ly1A 181 1.04e+01 c.37.1.1 74334 1bmv2 374 1.09e+01 1bmv2 1ad2 228 1.17e+01 1ad2 e.24.1.1 43353 1gg3A 279 1.18e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1k8kD 300 1.18e+01 d.198.2.1 68309 d.198.2.1 68310 1rcf 169 1.21e+01 1rcf c.23.5.1 31170 1yacA 208 1.22e+01 1yacA c.33.1.2 31757 1g7fA 298 1.26e+01 1pty c.45.1.2 60330 1p4cA 380 1.28e+01 1ifqA 138 1.30e+01 1ifqA d.110.4.1 62350 1e8yA 966 1.32e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1jmkC 230 1.38e+01 c.69.1.22 71747 1v39 322 1.42e+01 3mag c.66.1.25 34206 1vp9 322 1.42e+01 3mag c.66.1.25 34210 1lwjA 441 1.51e+01 b.71.1.1 74303 c.1.8.1 74304 1ofnA 205 1.51e+01 1oi6A 205 1.51e+01 1pgl2 370 1.51e+01 1tf4A 605 1.55e+01 1tf4A a.102.1.2 18827 b.2.2.2 22393 1byqA 228 1.56e+01 1yer d.122.1.1 41100 1ja1A 622 1.59e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1nktA 922 1.60e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1ihkA 174 1.63e+01 1bfg b.42.1.1 62384 1ne9A 335 1.66e+01 1g8pA 350 1.68e+01 1g8pA c.37.1.20 60376 1p9bA 442 1.70e+01 1iupA 282 1.73e+01 c.69.1.10 76815 1fmtA 314 1.76e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1cb8A 678 1.79e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1i45A 248 1.87e+01 1amk c.1.1.1 61665 1dp0A 1023 1.93e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1ngvA 534 1.96e+01 c.111.1.2 85698 1jz8A 1023 1.97e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 1h0hA 977 1.98e+01 b.52.2.2 76435 c.81.1.1 76436 1g291 372 2.01e+01 1g291 1dgwX 79 2.09e+01 1caxB b.82.1.2 28091 1c7gA 456 2.14e+01 1mxgA 435 2.15e+01 b.71.1.1 85193 c.1.8.1 85194 1fnnA 389 2.22e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1neyA 247 2.34e+01 c.1.1.1 80449 1an9A 340 2.35e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1jykA 254 2.36e+01 c.68.1.13 67458 1s0uA 408 2.42e+01 1a53 247 2.49e+01 1a53 c.1.2.4 28564 1ht6A 405 2.55e+01 b.71.1.1 83629 c.1.8.1 83630 1ogpA 393 2.59e+01 1gx3A 284 2.61e+01 d.3.1.5 70678 1khbA 625 2.64e+01 c.91.1.1 68606 c.109.1.1 68607 1kk1A 410 2.67e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1igs 248 2.68e+01 1a53 c.1.2.4 28565 1ab4 477 2.68e+01 1ab4 e.11.1.1 43251 1gsa 316 2.71e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1avaA 403 2.71e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1fs5A 266 2.76e+01 c.35.1.1 65044 1g5aA 628 2.81e+01 b.71.1.1 65152 c.1.8.1 65153 1jlnA 297 2.82e+01 1pty c.45.1.2 63172 1ovnA 248 2.88e+01 3mag 307 2.88e+01 3mag c.66.1.25 34205 1uumA 372 2.94e+01 1amy 403 2.96e+01 1jdc b.71.1.1 27799 c.1.8.1 28786 1hl9A 449 3.04e+01 1pii 452 3.13e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1js8A 394 3.14e+01 a.86.1.1 67219 b.112.1.1 67220 1o7tA 309 3.30e+01 c.94.1.1 86645 1g8aA 227 3.33e+01 1i60A 278 3.34e+01 c.1.15.4 71118 1vheA 373 3.38e+01 1ohlA 342 3.41e+01 c.1.10.3 87035 1e9lA 377 3.56e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1e5kA 201 3.62e+01 1fr9A c.68.1.8 34578 1bn7A 294 3.63e+01 1bn6A c.69.1.8 34677 1sat 471 3.64e+01 1sat b.79.1.1 28014 d.92.1.6 40300 1dyqA 234 3.71e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1kl1A 419 3.74e+01 c.67.1.4 72663 1ca1 370 3.75e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1edzA 320 3.78e+01 1ee9A c.2.1.7 30287 c.58.1.2 33935 1rxxA 421 3.85e+01 1kjvA 284 3.86e+01 b.1.1.2 77421 d.19.1.1 77422 1n6aA 259 3.86e+01 b.76.2.1 80121 b.85.7.1 80122