# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h2kA 349 9.46e-32 b.82.2.6 76572 1fi2A 201 5.02e-04 1fi2A b.82.1.2 59845 2arcA 164 4.37e-03 2arcA b.82.4.1 28148 1o1yA 239 6.94e-03 c.23.16.1 86554 1dgwA 178 7.46e-03 1dgwA b.82.1.2 28090 1o4tA 133 7.99e-03 b.82.1.9 86622 1lr5A 163 1.05e-02 b.82.1.2 74215 1plzA 189 2.11e-02 b.82.1.7 88160 1qxrA 189 2.74e-02 1a8s 273 5.78e-02 1brt c.69.1.12 34710 1d2eA 397 8.03e-02 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1qwrA 319 1.04e-01 1ojxA 263 1.10e-01 1htqA 477 1.28e-01 d.15.9.1 71035 d.128.1.1 71036 1qhoA 686 1.48e-01 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1j58A 385 1.64e-01 b.82.1.2 71531 1od5A 492 1.72e-01 b.82.1.2 86832 b.82.1.2 86833 1uok 558 2.03e-01 1uok b.71.1.1 27801 c.1.8.1 28788 1knwA 425 2.08e-01 1nxmA 197 2.90e-01 b.82.1.1 86385 1e8gA 560 3.34e-01 1qltA d.58.32.1 39455 d.145.1.1 41718 1dgwY 93 3.69e-01 1caxB 1az9 457 3.85e-01 1az9 c.55.2.1 33547 d.127.1.1 41164 2phlA 397 4.33e-01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1g291 372 5.37e-01 1g291 1j8fA 323 6.05e-01 1j8fA c.31.1.5 62738 1exmA 405 6.32e-01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1mrzA 293 6.34e-01 1fiy 883 6.90e-01 1fiy c.1.12.3 29307 1e5rA 290 7.58e-01 1e5rA b.82.2.4 59276 1nrfA 262 8.01e-01 1m2kA 249 9.05e-01 c.31.1.5 84754 1ha3A 405 9.83e-01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1yacA 208 1.14e+00 1yacA c.33.1.2 31757 1o2dA 371 1.19e+00 e.22.1.2 86591 1cb8A 678 1.62e+00 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1jqnA 883 1.62e+00 c.1.12.3 77159 1ptmA 329 1.91e+00 1gdeA 389 2.13e+00 c.67.1.1 60456 1cznA 169 2.13e+00 1rcf c.23.5.1 31181 1d3cA 686 2.29e+00 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1mkeA 152 2.45e+00 b.55.1.4 79231 1kyqA 274 2.45e+00 c.2.1.11 73281 e.37.1.1 73282 1ad2 228 2.59e+00 1ad2 e.24.1.1 43353 1pjcA 361 2.77e+00 1sayA c.2.1.4 30101 c.23.12.2 31361 1ifqA 138 2.79e+00 1ifqA d.110.4.1 62350 1e7uA 961 3.11e+00 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1idk 359 3.28e+00 1qcxA b.80.1.2 28025 1rcf 169 3.42e+00 1rcf c.23.5.1 31170 1d2fA 390 3.43e+00 1d2fA c.67.1.3 34411 1ofnA 205 3.50e+00 1byqA 228 3.78e+00 1yer d.122.1.1 41100 1ne9A 335 4.15e+00 1vpt 348 4.34e+00 3mag c.66.1.25 34207 1oi6A 205 4.50e+00 1kjvA 284 4.65e+00 b.1.1.2 77421 d.19.1.1 77422 1amy 403 4.85e+00 1jdc b.71.1.1 27799 c.1.8.1 28786 1dar 691 4.91e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1jm6A 407 5.37e+00 a.29.5.1 66876 d.122.1.4 66877 1mdbA 539 5.39e+00 e.23.1.1 79008 1uwvA 433 5.65e+00 1g8sA 230 5.86e+00 1p4cA 380 5.91e+00 1fbnA 230 5.98e+00 1fbnA c.66.1.3 34181 1oboA 169 6.09e+00 c.23.5.1 86776 1nofA 383 6.29e+00 1k8kD 300 6.41e+00 d.198.2.1 68309 d.198.2.1 68310 1uyrA 737 6.45e+00 1ps9A 671 6.90e+00 1pamA 686 6.99e+00 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1tf4A 605 7.07e+00 1tf4A a.102.1.2 18827 b.2.2.2 22393 1ihkA 174 7.19e+00 1bfg b.42.1.1 62384 1v39 322 7.36e+00 3mag c.66.1.25 34206 1vp9 322 7.36e+00 3mag c.66.1.25 34210 1ly1A 181 7.38e+00 c.37.1.1 74334 1d3vA 323 7.66e+00 1d3vA c.42.1.1 32559 1su4A 994 7.66e+00 1a53 247 7.70e+00 1a53 c.1.2.4 28564 2sqcA 631 7.72e+00 2sqcA a.102.4.2 18854 a.102.4.2 18855 12asA 330 7.93e+00 12asA d.104.1.1 40783 1eokA 290 7.99e+00 1eokA c.1.8.5 28991 1ax4A 467 8.23e+00 1ax4A c.67.1.2 34391 1igs 248 8.27e+00 1a53 c.1.2.4 28565 1bjwA 382 8.45e+00 1bjwA c.67.1.1 34349 1fsu 492 8.49e+00 1auk c.76.1.2 35032 1avaA 403 8.54e+00 1jdc b.71.1.1 27797 c.1.8.1 28784 1pmmA 466 8.62e+00 1eluA 390 8.88e+00 1elqA c.67.1.3 34434 1elqA 390 9.04e+00 1elqA c.67.1.3 34436 1b5pA 385 9.30e+00 1ve9A 347 9.94e+00 1qa7A 217 1.01e+01 1havA b.47.1.4 26425 1jmkC 230 1.06e+01 c.69.1.22 71747 1dmlA 319 1.07e+01 1dmlA d.131.1.2 41380 d.131.1.2 41381 1ab4 477 1.11e+01 1ab4 e.11.1.1 43251 1rn5A 177 1.16e+01 1hl9A 449 1.17e+01 1ht6A 405 1.22e+01 b.71.1.1 83629 c.1.8.1 83630 1j5sA 463 1.26e+01 c.1.9.8 71580 1js8A 394 1.27e+01 a.86.1.1 67219 b.112.1.1 67220 1korA 400 1.30e+01 c.26.2.1 72824 d.210.1.1 72825 1khbA 625 1.35e+01 c.91.1.1 68606 c.109.1.1 68607 1n7oA 721 1.36e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1p9bA 442 1.38e+01 1v5lA 103 1.40e+01 1e8yA 966 1.41e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1uumA 372 1.42e+01 1nsf 273 1.42e+01 1d2nA c.37.1.20 32429 1jykA 254 1.45e+01 c.68.1.13 67458 1d2nA 272 1.50e+01 1d2nA c.37.1.20 32428 1ppa 121 1.51e+01 1poa a.133.1.2 19550 1lv7A 257 1.56e+01 c.37.1.20 78232 1an9A 340 1.57e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 3thiA 371 1.57e+01 2thiA c.94.1.1 35792 1ohlA 342 1.58e+01 c.1.10.3 87035 1egaA 301 1.59e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1v33A 366 1.60e+01 1oe4A 247 1.62e+01 c.18.1.3 86895 1mvlA 209 1.63e+01 c.34.1.1 85146 1n1jA 93 1.65e+01 a.22.1.3 79813 1qo2A 241 1.66e+01 1qo2A c.1.2.1 28533 1vhcA 224 1.66e+01 1n6aA 259 1.67e+01 b.76.2.1 80121 b.85.7.1 80122 3mag 307 1.68e+01 3mag c.66.1.25 34205 1o91A 178 1.70e+01 1ngvA 534 1.71e+01 c.111.1.2 85698 1xo1A 291 1.73e+01 1exnA a.60.7.1 18086 c.120.1.2 33356 1ju3A 583 1.80e+01 b.18.1.13 67300 c.69.1.21 67301 1dyqA 234 1.82e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1eguA 731 1.82e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1lzlA 323 1.82e+01 c.69.1.2 78306 1eerB 227 1.86e+01 1eerB b.1.2.1 22011 b.1.2.1 22012 1h7nA 342 1.88e+01 1b4kA c.1.10.3 60726 1kk1A 410 1.92e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1hkhA 279 1.96e+01 1o5uA 101 1.96e+01 1bia 321 1.96e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1h0hA 977 2.02e+01 b.52.2.2 76435 c.81.1.1 76436 1mxgA 435 2.05e+01 b.71.1.1 85193 c.1.8.1 85194 1id2A 106 2.07e+01 1aac b.6.1.1 62288 1g8pA 350 2.08e+01 1g8pA c.37.1.20 60376 1e20A 209 2.09e+01 1e20A c.34.1.1 31759 1r9fA 136 2.10e+01 1dgwX 79 2.10e+01 1caxB b.82.1.2 28091 1js3A 486 2.10e+01 c.67.1.6 67215 1s8iA 121 2.16e+01 1g87A 614 2.28e+01 a.102.1.2 83275 b.2.2.2 83276 1igwA 434 2.29e+01 c.1.12.7 62370 1pii 452 2.29e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1jdpA 441 2.32e+01 c.93.1.1 62906 1mc2A 122 2.33e+01 a.133.1.2 74622 1n3lA 372 2.36e+01 c.26.1.1 79966 1mkiA 330 2.43e+01 e.3.1.2 84994 1hlgA 371 2.45e+01 1hlgA c.69.1.6 34656 1orvA 728 2.46e+01 b.70.3.1 87354 c.69.1.24 87355 1sdwA 314 2.48e+01 1pea 385 2.50e+01 1pea c.93.1.1 35662 1po5A 476 2.50e+01 1i7qB 193 2.53e+01 1qdlB c.23.16.1 61902 1rypB 250 2.53e+01 1rypB d.153.1.4 41933 1i45A 248 2.58e+01 1amk c.1.1.1 61665 1aa8A 347 2.61e+01 1an9A c.4.1.2 30619 d.16.1.3 37906 1v8gA 329 2.65e+01 1s0uA 408 2.65e+01 1oyeA 1049 2.67e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1ltlA 279 2.79e+01 b.40.4.11 84701 1db3A 372 2.82e+01 1db3A c.2.1.2 29813 1a8h 500 2.82e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1m1nB 522 2.85e+01 c.92.2.3 78418 1lwjA 441 2.85e+01 b.71.1.1 74303 c.1.8.1 74304 1pzxA 289 2.86e+01 1j99A 293 2.90e+01 c.37.1.5 71618 1dhr 241 2.91e+01 1dhr c.2.1.2 29832 1qtqA 553 2.93e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 1uocA 289 2.96e+01 1rxyA 253 3.01e+01 1dp0A 1023 3.04e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1jmsA 381 3.06e+01 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 1o7tA 309 3.08e+01 c.94.1.1 86645 1jz8A 1023 3.13e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 1lx7A 253 3.15e+01 c.56.2.1 74329 1qjcA 158 3.15e+01 1b6tA c.26.1.3 63328 1pvvA 315 3.19e+01 1zpdA 568 3.23e+01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1rypF 233 3.27e+01 1rypF d.153.1.4 41937 1ut7A 171 3.27e+01 1evhA 112 3.32e+01 1evhA b.55.1.4 26997 1ivnA 190 3.40e+01 c.23.10.5 83719 1a2vA 655 3.44e+01 1a2vA b.30.2.1 24416 d.17.2.1 38059 d.17.2.1 38060 1ovnA 248 3.47e+01 1php 394 3.54e+01 16pk c.86.1.1 35452 1pa2A 306 3.58e+01 1bgp a.93.1.1 18693 1sn4A 64 3.67e+01 1aho g.3.7.1 44136 1ns5A 155 3.69e+01 c.116.1.3 80705 1l0wA 580 3.72e+01 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1v7zA 260 3.72e+01 1fnnA 389 3.75e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1iupA 282 3.80e+01 c.69.1.10 76815 1kv5A 250 3.83e+01 c.1.1.1 73052 1dbfA 127 3.92e+01 2chsA d.79.1.2 39761 1bjx 110 3.94e+01 1bjx c.47.1.2 32774 1i52A 236 4.00e+01 1i52A c.68.1.13 61767