# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h2kA 349 8.64e-32 b.82.2.6 76572 1qwrA 319 9.38e-03 2arcA 164 1.41e-02 2arcA b.82.4.1 28148 1htqA 477 5.47e-02 d.15.9.1 71035 d.128.1.1 71036 1dpgA 485 8.90e-02 1dpgA c.2.1.3 30074 d.81.1.5 39989 2phlA 397 3.06e-01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1j58A 385 3.53e-01 b.82.1.2 71531 1q16A 1247 3.64e-01 2ng1 293 3.86e-01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1ad3A 452 9.79e-01 1ad3A c.82.1.1 35335 1fbnA 230 1.00e+00 1fbnA c.66.1.3 34181 1fi2A 201 1.34e+00 1fi2A b.82.1.2 59845 1g8sA 230 1.49e+00 1ls1A 295 1.52e+00 a.24.13.1 78170 c.37.1.10 78171 1uwvA 433 1.62e+00 1mrzA 293 1.73e+00 1kmvA 186 1.76e+00 c.71.1.1 72757 1oywA 523 2.01e+00 1nrfA 262 2.02e+00 1qxrA 189 2.41e+00 1o1yA 239 2.53e+00 c.23.16.1 86554 1bmv2 374 2.85e+00 1bmv2 1plzA 189 3.39e+00 b.82.1.7 88160 1e5rA 290 3.63e+00 1e5rA b.82.2.4 59276 1pgl2 370 4.23e+00 1mwxA 646 4.30e+00 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1ka2A 499 5.06e+00 d.92.1.5 77305 1jm6A 407 5.30e+00 a.29.5.1 66876 d.122.1.4 66877 1n40A 396 6.64e+00 a.104.1.1 79977 1ptvA 321 6.77e+00 1pty c.45.1.2 32665 1rxxA 421 8.18e+00 1od5A 492 9.67e+00 b.82.1.2 86832 b.82.1.2 86833 8dfr 189 9.78e+00 1aoeA c.71.1.1 34895 1ra9 159 1.30e+01 1vdrA c.71.1.1 34820 1dgwA 178 1.50e+01 1dgwA b.82.1.2 28090 1guxA 218 1.53e+01 1guxA a.74.1.3 18388 1lfkA 398 1.66e+01 a.104.1.1 77926 1n25A 368 1.66e+01 c.37.1.20 85264 1q8iA 783 1.72e+01 1idk 359 1.74e+01 1qcxA b.80.1.2 28025 1pa1A 310 1.76e+01 1owfB 94 1.85e+01 a.55.1.1 87488 1ne9A 335 1.86e+01 1lox 662 2.17e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1g5aA 628 2.29e+01 b.71.1.1 65152 c.1.8.1 65153 1f20A 435 2.32e+01 b.43.4.1 64932 c.25.1.4 64933 1fvgA 199 2.40e+01 1fvaA d.58.28.1 39408 1mdbA 539 2.43e+01 e.23.1.1 79008 2ak3A 226 2.44e+01 1zin c.37.1.1 31892 g.41.2.1 45193 1df7A 159 2.54e+01 3dfr c.71.1.1 34885 1v7nV 163 2.58e+01 1ki1B 352 2.59e+01 a.87.1.1 72497 b.55.1.1 72498 1v5lA 103 2.79e+01 1uyrA 737 2.86e+01 1f0lA 535 2.90e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1qhfA 240 2.91e+01 1qhfA c.60.1.1 33960 1dqaA 467 3.13e+01 1dqaA d.58.20.1 39364 d.179.1.1 42585 2ran 316 3.16e+01 1avc a.65.1.1 18170 1ui0A 205 3.23e+01 1kaeA 434 3.25e+01 c.82.1.2 72247 1omwA 689 3.29e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1nm2A 317 3.39e+01 c.19.1.1 80654 d.58.23.1 80655 1r12A 258 3.41e+01 1lbeA 258 3.70e+01 1lbeA e.4.1.1 42773 1qusA 322 3.80e+01 1ltm d.2.1.6 36991 2occA 514 3.81e+01 2occA f.24.1.1 43518 1nxmA 197 3.82e+01 b.82.1.1 86385 1lcyA 325 3.83e+01 b.36.1.4 73834 b.47.1.1 73835 1i1qB 192 3.86e+01 1qdlB c.23.16.1 61544 1d0yA 761 3.91e+01 1lvk b.34.3.1 24581 c.37.1.9 32178