;  SAM: prettyalign v3.5 (May 1, 2004) compiled 07/18/04_06:53:54
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                             10        20        30        40        5
                              |         |         |         |         
T0219 msavtesv.......--------------------------LESIISPVTMSEFLEEYWPV-KP
1mzeA gamaataaeavasgs-GEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEP


      0        60             70        80        90       100       1
      |         |              |         |         |         |        
T0219 LVARGEVERFTSIpGFekvrTLENVLAIYNNPVMVVGDA--------------VIEESEGITDR
1mzeA VVLTDTNLVYPAL.KW....DLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNR


      10       120       130       140           150       160       1
       |         |         |         |             |         |        
T0219 FLVSPAEALEWYEK-----GAALEFDFTDLFIPQVRrwieKLKAE-------------LRLPAG
1mzeA EEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGR....KIVMDFLGFNWNWINKQQGKRGWG


      70       180       190       200       210       220            
       |         |         |         |         |         |            
T0219 TSSKAIVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSeapyyPDDLQ
1mzeA QLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHH.....PCDRQ


      230       240       250       260       270       280       290 
        |         |         |         |         |         |         | 
T0219 SYWKGDPPKEDLP------DAEIVNLTPGTMLYLPRGLWHSTKSD---QATLALNITF-GQPAW
1mzeA SQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTP


              300       310       320       330                       
                |         |         |         |                       
T0219 ..LDLMLAALRKKLISDNRFRELAVNHQSLHESSK-----------selngylesliqtlsena
1mzeA krIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN..................


                                         
                                         
T0219 etltpeqifqsqdsdfdpyqstqlvfrqlltsykf
1mzeA ...................................