# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v4vA 376 6.25e-01 1pz7A 204 8.56e-01 1q2yA 140 1.02e+00 1e5dA 402 1.84e+00 1e5dA c.23.5.1 31208 d.157.1.3 42061 1o7jA 327 1.84e+00 c.88.1.1 81140 1or0B 528 2.17e+00 1gntA 553 2.40e+00 e.26.1.1 70290 1mwxA 646 2.68e+00 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1g5tA 196 2.84e+00 1g5rA c.37.1.11 32366 1e2uA 553 2.93e+00 1e1dA e.26.1.1 43362 1f3iA 481 2.95e+00 1b7eA 2bbkH 355 3.27e+00 2bbkH b.69.2.1 27634 1nhp 447 3.39e+00 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1nhs 447 3.53e+00 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1gypA 358 3.96e+00 1dssG c.2.1.3 30004 d.81.1.1 39919 1dfaA 454 4.36e+00 1vdeA b.86.1.2 28375 d.95.2.2 40575 d.95.2.2 40576 1k3tA 359 5.25e+00 c.2.1.3 72022 d.81.1.1 72023 1ecrA 309 5.88e+00 1ecrA e.2.1.1 42678 1k0eA 453 5.94e+00 d.161.1.1 67938 1iakA 199 5.94e+00 1iakA b.1.1.2 21625 d.19.1.1 38199 1dc1A 323 5.99e+00 1dc1A c.52.1.11 33321 1n8fA 350 6.88e+00 c.1.10.4 85397 1ufoA 238 6.99e+00 1bd3A 243 7.15e+00 1bd3A c.61.1.1 34098 1qz5A 375 7.23e+00 1n9pA 207 7.40e+00 b.1.18.16 80343 1cc1L 498 7.81e+00 1h2rL e.18.1.1 43301 1t8hA 277 7.91e+00 1bkb 136 7.95e+00 1bkb b.34.5.2 24609 b.40.4.5 25341 1ek0A 170 8.27e+00 1ctqA c.37.1.8 32076 1uc7A 125 8.29e+00 1uuqA 440 8.42e+00 1gg1A 350 8.97e+00 1qr7A c.1.10.4 29187 1lnsA 763 9.44e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1fljA 260 9.63e+00 2cba b.74.1.1 27954 1hcb 260 1.01e+01 2cba b.74.1.1 27814 1ek1A 554 1.08e+01 1cr6B c.108.1.2 43335 c.69.1.11 34685 1qw9A 502 1.09e+01 1lldA 319 1.13e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1fc6A 388 1.15e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1e3mA 800 1.25e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 1icxA 155 1.31e+01 d.129.3.1 71191 1n40A 396 1.32e+01 a.104.1.1 79977 1h09A 338 1.34e+01 b.109.1.1 83420 c.1.8.8 83421 1pb7A 292 1.42e+01 c.94.1.1 88025 1nrwA 288 1.46e+01 c.108.1.10 86128 2btfA 375 1.48e+01 1yagA c.55.1.1 33429 c.55.1.1 33430 1n67A 359 1.55e+01 b.2.3.4 85354 b.2.3.4 85355 1musA 477 1.57e+01 c.55.3.4 79494 1i7qA 519 1.61e+01 1qdlA d.161.1.1 61901 1fjjA 159 1.62e+01 1fjjA b.17.1.2 59852 1fm2B 520 1.65e+01 1fm2B 1j6zA 376 1.67e+01 1yagA c.55.1.1 62667 c.55.1.1 62668 1h32B 138 1.70e+01 a.3.1.1 76620 1egaA 301 1.70e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1uteA 313 1.74e+01 1uteA d.159.1.1 42078 1k8kA 418 1.88e+01 c.55.1.1 68305 c.55.1.1 68306 1qksA 567 1.90e+01 1qksA a.3.1.2 15951 b.70.2.1 27710 1h30A 422 1.92e+01 b.29.1.4 76604 b.29.1.4 76605 6ldh 330 1.94e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1gnlA 544 2.05e+01 e.26.1.1 70287 1k3rA 268 2.05e+01 b.40.4.10 72018 c.116.1.2 72019 1e1oA 504 2.06e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1auk 489 2.08e+01 1auk c.76.1.2 35030 1kshA 186 2.09e+01 c.37.1.8 72914 1bv1 159 2.11e+01 1bv1 d.129.3.1 41313 1kb0A 677 2.14e+01 a.3.1.6 68378 b.70.1.1 68379 1gpmA 525 2.14e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1gsa 316 2.16e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1dmgA 225 2.18e+01 1dmgA c.22.1.1 31036 1jbbA 153 2.19e+01 1u9aA d.20.1.1 62842 1lm8V 160 2.21e+01 b.3.3.1 74035 9gafA 295 2.22e+01 1apyA d.153.1.5 42008 1l6rA 227 2.27e+01 c.108.1.10 77768 1o59A 355 2.39e+01 1cc1S 283 2.42e+01 2frvA e.19.1.1 43313 1m7sA 484 2.43e+01 e.5.1.1 74574 1c8uA 285 2.45e+01 1c8uA d.38.1.3 38547 d.38.1.3 38548 1gln 468 2.52e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1pixA 587 2.53e+01 1e5pA 151 2.55e+01 1bj7 b.60.1.1 59272 1vhh 162 2.61e+01 1vhh d.65.1.2 39550 1d3bA 75 2.63e+01 1d3bA b.38.1.1 24798 1p4kA 295 2.66e+01 d.153.1.5 87772 1jatA 155 2.78e+01 1u9aA d.20.1.1 62818 1fsyA 358 2.81e+01 1gceA e.3.1.1 60016 1ltlA 279 2.82e+01 b.40.4.11 84701 1jfuA 186 2.86e+01 c.47.1.10 62940 1prn 289 2.86e+01 3prn f.4.3.1 43762 1dgaA 375 2.88e+01 1yagA 1jz8A 1023 2.91e+01 b.1.4.1 67830 b.1.4.1 67831 b.18.1.5 67832 b.30.5.1 67833 c.1.8.3 67834 1dp0A 1023 2.94e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1d4xA 375 2.97e+01 1yagA c.55.1.1 59107 c.55.1.1 59108 1rztA 331 3.02e+01 1trb 320 3.02e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1p5vA 235 3.04e+01 b.1.11.1 87812 b.7.2.1 87813 1j7nA 776 3.17e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1vybA 238 3.18e+01 1j09A 468 3.20e+01 a.97.1.1 77025 c.26.1.1 77026 1kpgA 287 3.21e+01 c.66.1.18 68735 1j31A 262 3.22e+01 1mh1 186 3.26e+01 1eesA c.37.1.8 32002 1hp5A 512 3.33e+01 1hp4A c.1.8.6 61113 d.92.2.1 61114 1sn4A 64 3.41e+01 1aho g.3.7.1 44136 1i31A 314 3.46e+01 1bw8A b.2.7.1 22481 1e5kA 201 3.46e+01 1fr9A c.68.1.8 34578 1mgtA 174 3.48e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1h80A 464 3.50e+01 b.80.1.8 65714 1qfeA 252 3.52e+01 1qfeA c.1.10.1 29167 1vjw 60 3.58e+01 1fxd d.58.1.4 38991 1led 243 3.62e+01 1led b.29.1.1 24039 1lugA 259 3.63e+01 1bs0A 384 3.69e+01 1bs0A c.67.1.4 34490 1vcbC 160 3.70e+01 1vcbC b.3.3.1 22535 1oe1A 336 3.75e+01 b.6.1.3 86891 b.6.1.3 86892 1h8eH 146 3.75e+01 1e79H b.93.1.1 60757 1hruA 188 3.80e+01 1hruA d.115.1.1 40926 1a88A 275 3.86e+01 1brt c.69.1.12 34707 1pi4A 358 3.87e+01 1lk5A 229 3.88e+01 c.35.1.2 73960 d.58.40.1 73961 1dj0A 264 3.97e+01 1dj0A d.58.35.1 39497 d.58.35.1 39498 1lrzA 426 3.99e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169