PFRMAT RR
TARGET T0218
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MQVRIERAERIESELEEHVGDQTFVEESRFLEEDEQREGEILDQIIFVDG
KRRSFVRITTDEGITGIFAELCVGAVIWDREGGTKTLFSPDKPPVKERVL
GFSQSFQEEGYEEVGGILFKVVKEGKDAMQSIDLYMRSLEIEEVRKHMDK
NILIVKDGPAARELPFEENVGPIGLVKNIGVTELSKEDFKKLRFLKKGKR
SKMFVSSRETPLKKVGAYVKLIDGEGIRGLVRLETYVKDDNQIPYIRKVF
DDLAKTLPHLTADLPIPRLPENILPIQFLEENLSYYLTDKNYMNTRLFAY
IGR
52 237 0 8 0.38845
67 203 0 8 0.3655
132 203 0 8 0.36295
67 132 0 8 0.3604
119 287 0 8 0.34765
189 203 0 8 0.3213
237 287 0 8 0.27455
67 189 0 8 0.2618
132 189 0 8 0.25925
24 212 0 8 0.2533
66 119 0 8 0.2278
60 132 0 8 0.2125
66 287 0 8 0.1887
END