# List of top-scoring protein chains for T0217.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ayaA 101 1.85e+00 1qadA d.93.1.1 40460 1fz1E 170 2.47e+00 1mtyG a.23.3.1 16500 1zakA 222 3.88e+00 1zin c.37.1.1 31913 g.41.2.1 45202 1ny6A 267 5.74e+00 1ny5A 387 8.89e+00 1jjgA 102 9.33e+00 b.40.4.5 71696 1mtyG 162 9.59e+00 1mtyG a.23.3.1 16498 1onwA 390 1.02e+01 b.92.1.7 87172 c.1.9.13 87173 1bgp 309 1.04e+01 1bgp a.93.1.1 18690 1onxA 389 1.05e+01 b.92.1.7 87176 c.1.9.13 87177 1geqA 248 1.09e+01 2tysA c.1.2.4 28589 1jboB 172 1.10e+01 a.1.1.3 84151 1i8tA 367 1.15e+01 c.4.1.3 66094 d.16.1.7 66095 1bjt 793 1.21e+01 1bjt e.11.1.1 43249 1dowA 205 1.27e+01 1dovA a.24.9.1 16626 1l6nA 289 1.34e+01 a.61.1.1 73624 a.73.1.1 73625 1hqlA 257 1.37e+01 b.29.1.1 65907 1b3sD 90 1.41e+01 1ay7B c.9.1.1 30846 1dovA 181 1.43e+01 1dovA a.24.9.1 16627 1g9zA 152 1.45e+01 1bp7A d.95.2.1 60408 1n3fA 163 1.50e+01 d.95.2.1 85299 1s3gA 217 1.52e+01 1tam 132 1.54e+01 1hiwA a.61.1.1 18128 1hiwA 133 1.55e+01 1hiwA a.61.1.1 18122 1uphA 131 1.55e+01 1moq 368 1.60e+01 1moq c.80.1.1 35302 1ji5A 142 1.64e+01 a.25.1.1 71678 1qo2A 241 1.66e+01 1qo2A c.1.2.1 28533 1af5 135 1.68e+01 1bp7A d.95.2.1 40572 1jyrA 96 2.00e+01 d.93.1.1 71969 1cj1A 96 2.03e+01 1griA d.93.1.1 40476 1b2sD 90 2.05e+01 1ay7B c.9.1.1 30837 1tzeE 98 2.05e+01 1griA d.93.1.1 40468 1zfpE 98 2.06e+01 1griA d.93.1.1 40465 1qg1E 104 2.10e+01 1griA d.93.1.1 40489 1ghu 107 2.11e+01 1griA d.93.1.1 40475 1b0aA 288 2.18e+01 1a4iA c.2.1.7 30286 c.58.1.2 33934 1fhs 112 2.20e+01 1griA d.93.1.1 40488 1e69A 322 2.22e+01 1e69B c.37.1.12 32376 1fyrA 114 2.22e+01 1griA d.93.1.1 40469 1qzqA 483 2.24e+01 1s2kA 206 2.26e+01 1bm2A 117 2.26e+01 1griA d.93.1.1 40467 1bmbA 123 2.29e+01 1griA d.93.1.1 40466 1jy1A 464 2.38e+01 d.136.1.3 67438 d.136.1.3 67439 1rffA 485 2.51e+01 1n8pA 393 2.52e+01 c.67.1.3 80304 1ay7B 89 2.57e+01 1ay7B c.9.1.1 30836 6fabL 214 2.59e+01 8fabA b.1.1.1 19908 b.1.1.2 21002 1l9vA 317 2.73e+01 d.13.2.1 73760 d.216.1.1 73761 1nsoA 107 2.74e+01 b.50.1.1 80713 1a19A 90 2.75e+01 1ay7B c.9.1.1 30831 1jfqL 215 2.76e+01 b.1.1.1 66648 b.1.1.2 66649 1qgeE 97 2.79e+01 1cvl 1qcfA 453 2.86e+01 1fmk b.34.2.1 24498 d.93.1.1 40490 d.144.1.7 41680 1l1jA 239 2.90e+01 b.47.1.1 84516 1q7lB 88 3.04e+01 1iw0A 215 3.17e+01 a.132.1.1 83720 1irxA 523 3.19e+01 a.97.1.2 71378 c.26.1.1 71379 1oedA 227 3.29e+01 f.36.1.1 86911 2lhb 149 3.30e+01 2fal a.1.1.2 15597 3proC 166 3.38e+01 3proC d.52.1.1 38812 d.52.1.1 38813 1griA 217 3.43e+01 1griA b.34.2.1 24531 b.34.2.1 24532 d.93.1.1 40473 1gehA 444 3.53e+01 c.1.14.1 65181 d.58.9.1 65182 1gz5A 456 3.54e+01 c.87.1.6 76406 1ikfL 214 3.59e+01 32c2A b.1.1.1 20032 b.1.1.2 21086 1k78A 149 3.67e+01 a.4.1.5 68255 a.4.1.5 68256 1uqtA 482 3.68e+01 1b2uD 90 3.70e+01 1ay7B c.9.1.1 30843 2bb2 181 3.73e+01 2bb2 b.11.1.1 23604 b.11.1.1 23605 1fm5A 199 3.88e+01 1fm5A d.169.1.1 42330 1xyzA 347 3.92e+01 1taxA c.1.8.3 28804 1lmb3 92 3.96e+01 1lmb3 1pueE 89 3.99e+01 1awcA a.4.5.21 16165