# List of top-scoring protein chains for T0217.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k1xA 659 2.82e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1g2qA 187 2.83e+00 c.61.1.1 65117 1ayaA 101 3.51e+00 1qadA d.93.1.1 40460 1ny6A 267 5.79e+00 1ny5A 387 8.05e+00 1frb 315 8.44e+00 1frb c.1.7.1 28665 8acn 754 9.12e+00 1amj c.8.2.1 30724 c.83.1.1 35400 1b0aA 288 9.67e+00 1a4iA c.2.1.7 30286 c.58.1.2 33934 1nis 754 9.68e+00 1amj c.8.2.1 30730 c.83.1.1 35406 1dusA 194 9.87e+00 1dusA c.66.1.4 34182 1c9wA 315 1.15e+01 1frb c.1.7.1 28699 1e51A 330 1.21e+01 1b4kA c.1.10.3 59254 1pv8A 330 1.21e+01 1qo2A 241 1.45e+01 1qo2A c.1.2.1 28533 1ghu 107 1.48e+01 1griA d.93.1.1 40475 1jyrA 96 1.51e+01 d.93.1.1 71969 1m50A 365 1.51e+01 b.75.1.1 78632 1cj1A 96 1.51e+01 1griA d.93.1.1 40476 1ksaA 366 1.51e+01 4bcl b.75.1.1 27969 1tzeE 98 1.53e+01 1griA d.93.1.1 40468 1qg1E 104 1.53e+01 1griA d.93.1.1 40489 1zfpE 98 1.53e+01 1griA d.93.1.1 40465 1g9zA 152 1.54e+01 1bp7A d.95.2.1 60408 1n3fA 163 1.55e+01 d.95.2.1 85299 1fhs 112 1.58e+01 1griA d.93.1.1 40488 1gwjA 377 1.60e+01 c.1.4.1 70671 1fyrA 114 1.61e+01 1griA d.93.1.1 40469 1bm2A 117 1.63e+01 1griA d.93.1.1 40467 1i8tA 367 1.64e+01 c.4.1.3 66094 d.16.1.7 66095 1bmbA 123 1.64e+01 1griA d.93.1.1 40466 1af5 135 1.69e+01 1bp7A d.95.2.1 40572 1s0pA 176 1.70e+01 2bb2 181 1.71e+01 2bb2 b.11.1.1 23604 b.11.1.1 23605 1blbC 204 1.75e+01 2bb2 b.11.1.1 23610 b.11.1.1 23611 1blbA 204 1.76e+01 2bb2 b.11.1.1 23606 b.11.1.1 23607 1c97A 753 1.78e+01 1amj c.8.2.1 30731 c.83.1.1 35407 1b0jA 754 1.79e+01 1amj c.8.2.1 30719 c.83.1.1 35395 1b0mA 753 1.84e+01 1amj c.8.2.1 30722 c.83.1.1 35398 1s2kA 206 1.89e+01 7acn 754 1.89e+01 1amj c.8.2.1 30717 c.83.1.1 35393 1bgp 309 1.90e+01 1bgp a.93.1.1 18690 4lipD 320 2.06e+01 1cvl c.69.1.18 34783 1k78A 149 2.40e+01 a.4.1.5 68255 a.4.1.5 68256 1moq 368 2.46e+01 1moq c.80.1.1 35302 1zakA 222 2.50e+01 1zin c.37.1.1 31913 g.41.2.1 45202 1o4sA 389 2.51e+01 c.67.1.1 86620 1l9vA 317 2.63e+01 d.13.2.1 73760 d.216.1.1 73761 2lhb 149 2.64e+01 2fal a.1.1.2 15597 1qgeE 97 2.72e+01 1cvl 1c96A 753 2.87e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1ikfL 214 2.91e+01 32c2A b.1.1.1 20032 b.1.1.2 21086 1r89A 437 2.93e+01 1ii7A 333 2.96e+01 1ii7A d.159.1.4 62415 1dvrA 220 3.01e+01 1zin c.37.1.1 31899 g.41.2.1 45200 1griA 217 3.04e+01 1griA b.34.2.1 24531 b.34.2.1 24532 d.93.1.1 40473 1s9vB 198 3.05e+01 1fehA 574 3.09e+01 1fehA c.96.1.1 36015 d.15.4.2 37690 d.58.1.5 38998 1h41A 708 3.11e+01 c.1.8.10 83472 d.92.2.2 83473 1fz1E 170 3.13e+01 1mtyG a.23.3.1 16500 1ji5A 142 3.13e+01 a.25.1.1 71678 1geqA 248 3.17e+01 2tysA c.1.2.4 28589 1l1jA 239 3.22e+01 b.47.1.1 84516 1jboB 172 3.48e+01 a.1.1.3 84151 1ylvA 342 3.49e+01 1b4kA c.1.10.3 29180 1qui 321 3.53e+01 1ixh c.94.1.1 35769 1r0uA 148 3.55e+01 1gxsA 270 3.63e+01 c.69.1.5 76375 1oedA 227 3.67e+01 f.36.1.1 86911 1o60A 292 3.71e+01 1gqiA 708 3.74e+01 c.1.8.10 76279 d.92.2.2 76280 1f5oA 149 3.85e+01 2fal a.1.1.2 15598 1nsoA 107 3.91e+01 b.50.1.1 80713 1aw5 340 3.94e+01 1b4kA c.1.10.3 29181 1dvfC 107 3.98e+01 8fabA b.1.1.1 20106