PFRMAT RR TARGET T0217 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MVYVGTSGFSFEDWKGVVYPEHLKPSQFLKYYWAVLGFRIVELNFTYYTQ PSWRSFVQMLRKTPPDFYFTVKTPGSVTHVLWKEGKDPKEDMENFTRQIE PLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSWD REETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNERWF EAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQAAINA LQFKKMLEERV 144 154 0 8 0.64855 238 249 0 8 0.6392 70 189 0 8 0.5474 8 189 0 8 0.53125 6 113 0 8 0.51425 43 239 0 8 0.4947 7 189 0 8 0.4896 71 193 0 8 0.48705 7 165 0 8 0.4845 6 32 0 8 0.48195 193 249 0 8 0.4743 32 113 0 8 0.47175 144 217 0 8 0.4692 112 246 0 8 0.4692 43 110 0 8 0.45135 6 140 0 8 0.45135 43 168 0 8 0.43945 6 168 0 8 0.43945 6 110 0 8 0.4369 166 236 0 8 0.43435 165 235 0 8 0.4318 7 112 0 8 0.4318 2 43 0 8 0.4182 239 249 0 8 0.41565 132 253 0 8 0.4131 168 239 0 8 0.41055 6 189 0 8 0.40885 43 73 0 8 0.40375 99 144 0 8 0.4012 40 115 0 8 0.4012 7 237 0 8 0.39865 110 141 0 8 0.3961 43 165 0 8 0.38845 8 43 0 8 0.38845 7 44 0 8 0.38845 113 217 0 8 0.3859 149 217 0 8 0.38335 43 193 0 8 0.38335 112 249 0 8 0.37825 6 249 0 8 0.3757 11 77 0 8 0.3706 6 121 0 8 0.36805 73 113 0 8 0.36295 188 234 0 8 0.3604 4 250 0 8 0.3604 73 165 0 8 0.35785 11 75 0 8 0.3553 132 163 0 8 0.35275 71 246 0 8 0.34765 40 237 0 8 0.34595 110 246 0 8 0.3434 7 249 0 8 0.34085 7 239 0 8 0.33575 40 247 0 8 0.33065 32 140 0 8 0.33065 193 238 0 8 0.3281 73 249 0 8 0.3213 8 112 0 8 0.3213 112 189 0 8 0.31875 125 210 0 8 0.3162 189 235 0 8 0.3145 140 217 0 8 0.3145 113 149 0 8 0.3145 43 112 0 8 0.31195 8 164 0 8 0.31195 6 239 0 8 0.30685 73 239 0 8 0.3026 32 144 0 8 0.3026 113 239 0 8 0.30005 113 140 0 8 0.30005 68 211 0 8 0.30005 112 193 0 8 0.2975 99 168 0 8 0.2975 43 70 0 8 0.2975 9 59 0 8 0.2975 193 239 0 8 0.29495 101 195 0 8 0.29325 6 149 0 8 0.28815 6 18 0 8 0.28645 140 149 0 8 0.2839 129 140 0 8 0.28135 14 163 0 8 0.28135 11 144 0 8 0.28135 7 193 0 8 0.28135 170 199 0 8 0.27965 240 249 0 8 0.2771 6 70 0 8 0.27455 7 70 0 8 0.27285 165 239 0 8 0.2703 77 99 0 8 0.2703 7 154 0 8 0.2703 70 237 0 8 0.2686 70 245 0 8 0.26605 43 240 0 8 0.26605 45 211 0 8 0.2618 28 51 0 8 0.25925 59 239 0 8 0.25755 51 239 0 8 0.25755 41 78 0 8 0.25755 32 149 0 8 0.255 70 110 0 8 0.2533 217 239 0 8 0.25075 110 121 0 8 0.24905 28 140 0 8 0.24905 140 247 0 8 0.2465 51 121 0 8 0.2448 32 217 0 8 0.2448 6 45 0 8 0.2448 32 239 0 8 0.24225 32 51 0 8 0.24225 32 45 0 8 0.24225 170 242 0 8 0.24055 8 239 0 8 0.24055 165 241 0 8 0.2363 149 249 0 8 0.2363 112 239 0 8 0.2363 110 187 0 8 0.2363 239 248 0 8 0.2346 44 241 0 8 0.2346 50 241 0 8 0.23205 193 240 0 8 0.23035 154 217 0 8 0.23035 6 51 0 8 0.23035 193 212 0 8 0.2278 140 211 0 8 0.2278 18 31 0 8 0.2278 128 138 0 8 0.2261 168 188 0 8 0.2244 144 254 0 8 0.2244 144 227 0 8 0.2244 10 144 0 8 0.2244 8 70 0 8 0.2244 121 168 0 8 0.22185 45 187 0 8 0.22185 7 241 0 8 0.22185 2 99 0 8 0.22185 149 212 0 8 0.22015 14 41 0 8 0.22015 44 237 0 8 0.21845 195 216 0 8 0.21675 149 239 0 8 0.21675 51 113 0 8 0.21675 165 177 0 8 0.2142 98 121 0 8 0.2142 147 161 0 8 0.2125 128 140 0 8 0.2125 136 234 0 8 0.2108 187 235 0 8 0.2091 167 231 0 8 0.2091 110 247 0 8 0.2091 45 241 0 8 0.2091 133 247 0 8 0.20655 51 76 0 8 0.20655 43 241 0 8 0.20655 43 138 0 8 0.20655 121 140 0 8 0.20485 79 239 0 8 0.20485 51 140 0 8 0.20315 45 188 0 8 0.20315 11 239 0 8 0.20315 212 239 0 8 0.20145 196 210 0 8 0.20145 165 200 0 8 0.20145 164 242 0 8 0.20145 79 249 0 8 0.20145 73 136 0 8 0.20145 60 161 0 8 0.20145 31 170 0 8 0.20145 45 149 0 8 0.19975 31 51 0 8 0.19975 79 149 0 8 0.1972 45 140 0 8 0.1972 112 241 0 8 0.1955 43 211 0 8 0.1938 28 121 0 8 0.1938 212 249 0 8 0.1921 171 195 0 8 0.1921 45 144 0 8 0.1921 44 158 0 8 0.1921 11 241 0 8 0.1904 74 121 0 8 0.1887 44 121 0 8 0.1887 11 99 0 8 0.1887 79 193 0 8 0.187 76 113 0 8 0.187 8 241 0 8 0.187 51 98 0 8 0.1853 28 170 0 8 0.1853 193 241 0 8 0.1836 168 242 0 8 0.1836 221 253 0 8 0.1819 164 241 0 8 0.1819 227 236 0 8 0.1802 210 249 0 8 0.1802 92 121 0 8 0.1802 70 241 0 8 0.1802 10 68 0 8 0.1802 7 242 0 8 0.1802 7 31 0 8 0.1802 END