PFRMAT RR
TARGET T0217
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MVYVGTSGFSFEDWKGVVYPEHLKPSQFLKYYWAVLGFRIVELNFTYYTQ
PSWRSFVQMLRKTPPDFYFTVKTPGSVTHVLWKEGKDPKEDMENFTRQIE
PLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSWD
REETYEFLRNHGITFVVVDEPKLPGLFPYRPITTTDYAYFRFHGRNERWF
EAEGEERYDYLYSEEELKTLFEDVVELSRRVKETYVFFNNCYKGQAAINA
LQFKKMLEERV
8 189 0 8 0.448
144 154 0 8 0.415
238 249 0 8 0.409
193 238 0 8 0.409
193 249 0 8 0.401
70 189 0 8 0.384
71 193 0 8 0.364
32 113 0 8 0.339
7 239 0 8 0.318
2 43 0 8 0.31
7 165 0 8 0.308
193 239 0 8 0.305
7 241 0 8 0.305
7 237 0 8 0.303
189 241 0 8 0.293
110 141 0 8 0.29
125 210 0 8 0.288
7 189 0 8 0.288
144 227 0 8 0.285
7 70 0 8 0.283
70 237 0 8 0.28
43 239 0 8 0.28
43 193 0 8 0.28
165 241 0 8 0.278
73 113 0 8 0.278
43 70 0 8 0.278
8 43 0 8 0.278
166 236 0 8 0.276
71 246 0 8 0.276
40 115 0 8 0.276
8 70 0 8 0.276
7 249 0 8 0.276
11 241 0 8 0.273
7 242 0 8 0.273
4 250 0 8 0.273
113 239 0 8 0.271
11 75 0 8 0.271
112 246 0 8 0.268
165 239 0 8 0.266
99 144 0 8 0.266
70 241 0 8 0.266
28 140 0 8 0.266
216 239 0 8 0.264
193 241 0 8 0.264
239 249 0 8 0.261
79 241 0 8 0.261
8 112 0 8 0.261
28 183 0 8 0.259
210 249 0 8 0.257
112 239 0 8 0.257
43 240 0 8 0.257
168 242 0 8 0.255
168 239 0 8 0.255
167 243 0 8 0.255
144 196 0 8 0.255
170 242 0 8 0.252
166 237 0 8 0.252
70 192 0 8 0.252
6 189 0 8 0.252
167 190 0 8 0.25
112 189 0 8 0.25
73 239 0 8 0.25
43 241 0 8 0.25
43 189 0 8 0.25
40 237 0 8 0.25
32 140 0 8 0.25
6 239 0 8 0.248
6 113 0 8 0.248
6 70 0 8 0.248
195 216 0 8 0.246
189 237 0 8 0.246
140 243 0 8 0.246
7 193 0 8 0.246
7 168 0 8 0.246
170 241 0 8 0.243
168 249 0 8 0.243
168 188 0 8 0.243
112 241 0 8 0.243
11 165 0 8 0.243
170 183 0 8 0.241
6 140 0 8 0.241
196 241 0 8 0.239
165 196 0 8 0.239
98 243 0 8 0.239
43 73 0 8 0.239
6 249 0 8 0.239
210 239 0 8 0.237
129 140 0 8 0.237
111 190 0 8 0.237
80 241 0 8 0.237
44 70 0 8 0.237
235 249 0 8 0.235
189 235 0 8 0.235
165 242 0 8 0.235
113 140 0 8 0.235
7 44 0 8 0.235
6 168 0 8 0.235
168 196 0 8 0.232
70 79 0 8 0.232
55 115 0 8 0.232
43 110 0 8 0.232
8 239 0 8 0.232
6 79 0 8 0.232
44 237 0 8 0.23
44 85 0 8 0.23
8 164 0 8 0.23
7 112 0 8 0.23
139 234 0 8 0.228
74 247 0 8 0.228
44 146 0 8 0.228
112 249 0 8 0.226
170 247 0 8 0.224
112 193 0 8 0.224
73 193 0 8 0.224
44 241 0 8 0.224
196 210 0 8 0.222
193 240 0 8 0.222
193 210 0 8 0.222
171 242 0 8 0.222
110 187 0 8 0.222
43 112 0 8 0.222
7 154 0 8 0.222
6 241 0 8 0.222
196 207 0 8 0.22
192 242 0 8 0.22
167 182 0 8 0.22
125 239 0 8 0.22
115 209 0 8 0.22
75 164 0 8 0.22
43 141 0 8 0.22
END