# List of top-scoring protein chains for T0216.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6yA 301 1.28e+00 a.60.13.1 78716 c.66.1.23 78717 1emsA 440 3.09e+00 1emsA d.13.1.1 37520 d.160.1.1 42086 1hqmA 313 3.89e+00 i.8.1.1 45972 1l9uA 314 4.13e+00 i.8.1.1 73748 1j0dA 341 4.50e+00 c.79.1.1 83902 1f2dA 341 4.52e+00 1f2dA c.79.1.1 35298 1danL 152 4.57e+00 1edmB g.3.11.1 44209 g.3.11.1 44210 g.32.1.1 44965 1j0eA 341 4.68e+00 c.79.1.1 83906 1bqyA 234 5.06e+00 5ptp b.47.1.2 26332 1qq2A 199 5.31e+00 1qq2A c.47.1.10 33064 1sdmA 369 5.35e+00 1v7rA 186 6.52e+00 c.51.4.1 -7546 1h4pA 408 7.26e+00 c.1.8.3 -5314 1i6vA 314 8.08e+00 d.74.3.1 61852 d.181.1.1 61853 1koa 491 8.09e+00 1tkiA b.1.1.4 21712 d.144.1.7 41642 1im8A 244 8.37e+00 c.66.1.14 66212 1fmtA 314 9.87e+00 1fmtA b.46.1.1 25758 c.65.1.1 34174 1lkdA 297 1.14e+01 d.32.1.3 78059 d.32.1.3 78060 1on4A 174 1.20e+01 c.47.1.10 -7512 1p9bA 442 1.41e+01 c.37.1.10 -7115 1qibA 161 1.53e+01 1ck7A d.92.1.11 40359 1iw7A 315 1.89e+01 d.74.3.1 71470 d.181.1.1 71471 1eodA 100 2.05e+01 1t1dA d.42.1.2 38641 1eakA 421 2.05e+01 a.20.1.2 70093 d.92.1.11 70094 g.14.1.2 70095 g.14.1.2 70096 g.14.1.2 70097 1k8kB 394 2.08e+01 c.55.1.1 68307 1fvuB 125 2.09e+01 1ixxB d.169.1.1 42346 1su4A 994 2.26e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1hovA 163 2.27e+01 d.92.1.11 65897 1ck7A 631 2.29e+01 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1gfq 340 2.39e+01 2omf f.4.3.1 43751 1yal 216 2.46e+01 1cs8A d.3.1.1 37025 2scuB 388 2.49e+01 2scuB c.23.4.1 31141 d.142.1.4 41562 1jllB 388 2.49e+01 c.23.4.1 66853 d.142.1.4 66854 1knmA 130 2.61e+01 b.42.2.1 72781 1cqjB 385 2.64e+01 2scuB c.23.4.1 31143 d.142.1.4 41564 1q92A 197 2.81e+01 c.108.1.8 -6819 1kgf 258 2.84e+01 1btl e.3.1.1 42712 1kge 258 2.90e+01 1btl e.3.1.1 42708 1ghpA 258 2.90e+01 1btl e.3.1.1 60520 1nuiA 255 2.92e+01 e.13.1.2 86194 g.41.3.2 86195 1it2A 146 2.98e+01 a.1.1.2 66365 1gisA 248 3.01e+01 d.165.1.1 83289 1blp 257 3.01e+01 1btl e.3.1.1 42716 1giuA 247 3.01e+01 d.165.1.1 83290 1lmeA 176 3.02e+01 d.167.1.1 84629 1hwmB 266 3.07e+01 1abrB b.42.2.1 25569 b.42.2.1 25570 1omeA 258 3.11e+01 1btl e.3.1.1 42717 3blm 257 3.11e+01 1btl e.3.1.1 42709 1gzkA 315 3.19e+01 d.144.1.7 83406 1mrj 247 3.22e+01 1mrj d.165.1.1 42177 1j4gA 248 3.23e+01 d.165.1.1 66379 1alq 266 3.29e+01 1btl e.3.1.1 42707 1gznA 335 3.32e+01 d.144.1.7 83407 1ogpA 393 3.32e+01 b.1.18.6 -2744 d.176.1.1 -11708 1o6kA 336 3.33e+01 d.144.1.7 81091 1rq8A 104 3.34e+01 1mryA 339 3.36e+01 d.144.1.7 -11338 1eofA 100 3.38e+01 1t1dA d.42.1.2 38640 1o6lA 337 3.47e+01 d.144.1.7 81092 1op2A 234 3.62e+01 1okiA 210 3.64e+01 b.11.1.1 -3030 b.11.1.1 -3031 1pioA 257 3.69e+01 1btl e.3.1.1 42719 1ow1A 195 3.70e+01 unknown_sccs -4422 1k3pA 426 3.71e+01 a.103.1.1 77237 1owcA 427 3.72e+01 1jt8A 102 3.73e+01 b.40.4.5 63279 1mfgA 95 3.77e+01 b.36.1.1 79043 1v89A 118 3.85e+01 1bx2B 191 3.90e+01 1iakB b.1.1.2 21610 d.19.1.1 38184 1ci0A 228 3.91e+01 1ci0A b.45.1.1 25750 1gvmA 136 3.98e+01 b.109.1.1 70612