# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1emsA 440 2.06e-01 1emsA d.13.1.1 37520 d.160.1.1 42086 1mrj 247 6.69e-01 1mrj d.165.1.1 42177 1ndbA 596 7.35e-01 c.43.1.3 80411 c.43.1.3 80412 1s3iA 310 8.50e-01 b.46.1.1 -4111 c.65.1.1 -8042 1fnmA 691 9.88e-01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1h4pA 408 1.12e+00 c.1.8.3 -5314 1kafA 108 1.34e+00 d.199.1.1 68372 1dar 691 2.42e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1nvmB 312 2.50e+00 c.2.1.3 86251 d.81.1.1 86252 1vjzA 341 2.92e+00 c.1.8.3 -5318 3pmgA 561 3.93e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1dcuA 357 4.02e+00 1frpA e.7.1.1 42943 1fgp 70 4.20e+00 1g3p b.37.1.1 24795 1iakA 199 4.24e+00 1iakA b.1.1.2 21625 d.19.1.1 38199 1bqyA 234 4.52e+00 5ptp b.47.1.2 26332 1kn0A 212 4.56e+00 d.50.1.3 77444 1a6dA 545 4.97e+00 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1ut7A 171 5.17e+00 unknown_sccs -4724 1mrg 263 5.93e+00 1mrj d.165.1.1 42183 1nm8A 616 6.58e+00 c.43.1.3 85872 c.43.1.3 85873 1deuA 277 6.77e+00 1theB d.3.1.1 37085 1frvB 536 7.61e+00 1h2rL e.18.1.1 43296 1udmA 149 7.64e+00 1im8A 244 8.30e+00 c.66.1.14 66212 1hzdA 272 8.31e+00 c.14.1.3 65969 1ts3A 194 8.55e+00 1aw7A b.40.2.2 25168 d.15.6.1 37757 1r4pB 70 9.67e+00 b.40.2.1 -3887 1azqA 66 1.05e+01 1azpA b.34.13.1 37469 1lxnA 99 1.08e+01 d.58.48.1 84737 1kanA 253 1.11e+01 1knyA a.24.16.1 75878 d.218.1.1 75879 1azpA 66 1.12e+01 1azpA b.34.13.1 37467 1n6zA 105 1.15e+01 unknown_sccs 85369 1xgsA 295 1.19e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1oltA 457 1.20e+01 unknown_sccs -5688 1vjqA 79 1.21e+01 unknown_sccs -13478 1rgxA 114 1.22e+01 1f35A 162 1.23e+01 1f35A b.94.1.1 59628 1kjqA 391 1.25e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1c0dA 358 1.26e+01 1eceA c.1.8.3 28815 1j2gA 319 1.30e+01 1fa3A 96 1.33e+01 1molA d.17.1.1 37996 1op0A 234 1.35e+01 1dmhA 311 1.37e+01 1dmhA b.3.6.1 22633 3bamA 213 1.44e+01 1bam c.52.1.3 33288 1eqcA 394 1.47e+01 1cz1A c.1.8.3 28811 1fd9A 213 1.48e+01 1fd9A d.26.1.1 59771 1cz1A 394 1.51e+01 1cz1A c.1.8.3 28839 1gg4A 452 1.52e+01 1gg4A c.98.1.1 58985 c.59.1.1 33957 c.72.2.1 58986 1eceA 358 1.52e+01 1eceA c.1.8.3 28813 1jssA 224 1.54e+01 d.129.3.2 71844 1lxtA 561 1.58e+01 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1m6kA 251 1.60e+01 e.3.1.1 78695 3bamB 213 1.62e+01 1bam c.52.1.3 33289 1bo1A 416 1.66e+01 1bo1A d.143.1.2 41591 1dghB 498 1.72e+01 1cf9A e.5.1.1 42791 1nmeA 146 1.72e+01 c.17.1.1 85874 1dgfA 497 1.76e+01 1cf9A e.5.1.1 42782 1rypC 244 1.79e+01 1rypC d.153.1.4 41934 1cnv 299 1.79e+01 1cnv c.1.8.5 28989 1nbaA 264 1.79e+01 1nbaA unknown_sccs 31753 1jobA 162 1.80e+01 1f35A b.94.1.1 63207 1914 232 1.96e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1qd5A 275 2.02e+01 1qd5A f.4.2.1 43748 1rr9A 200 2.04e+01 unknown_sccs -9100 1ihfA 99 2.07e+01 1huuA a.55.1.1 17893 1owfA 99 2.07e+01 a.55.1.1 87487 1esgA 213 2.08e+01 1bam c.52.1.3 33286 1ci0A 228 2.11e+01 1ci0A b.45.1.1 25750 1pauA 147 2.11e+01 1pauA c.17.1.1 30994 1hztA 190 2.12e+01 1i9aA d.113.1.2 61459 1l1zA 274 2.19e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1r2zA 274 2.21e+01 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1lehA 364 2.23e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1o12A 376 2.28e+01 b.92.1.5 80758 c.1.9.10 80759 1ggxA 223 2.30e+01 1ggxA d.22.1.1 38367 1evlA 401 2.32e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1nijA 318 2.33e+01 c.37.1.10 85741 d.237.1.1 85742 1v7rA 186 2.40e+01 c.51.4.1 -7546 1ugiA 84 2.54e+01 1ugiA d.17.5.1 38125 1udiI 83 2.58e+01 1ugiA d.17.5.1 38124 1sap 66 2.61e+01 1azpA b.34.13.1 37472 1knyA 253 2.62e+01 1knyA a.24.16.1 75896 d.218.1.1 75897 1uiuA 502 2.67e+01 c.94.1.1 -8674 1cp3A 277 2.71e+01 1pauA c.17.1.1 30992 1hxxA 340 2.77e+01 2omf f.4.3.1 61385 1frpA 335 2.82e+01 1frpA e.7.1.1 42875 1b6a 478 2.83e+01 1bn5 a.4.5.25 16223 d.127.1.1 41160 1fpkA 335 2.86e+01 1frpA e.7.1.1 42930 1q7zA 566 2.87e+01 c.1.21.2 -5638 c.1.26.1 -5666 1i9aA 182 2.89e+01 1i9aA d.113.1.2 62082 1pwhA 327 2.91e+01 c.79.1.1 -8524 1g61A 228 2.95e+01 1g61A d.126.1.1 41126 2bosA 68 3.01e+01 2bosA b.40.2.1 25025 1eyzA 392 3.13e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1nulA 152 3.13e+01 1nulA c.61.1.1 34011 1ez1A 392 3.15e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 1ghsA 306 3.17e+01 1aq0A c.1.8.3 28840 1qf6A 642 3.18e+01 1qf6A c.51.1.1 33210 d.15.10.1 39551 d.67.1.1 39562 d.104.1.1 40759 1ewqA 765 3.26e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1kmnD 424 3.26e+01 1adjA c.51.1.1 33185 d.104.1.1 40734 1onqA 283 3.28e+01 b.1.1.2 -2640 d.19.1.1 -9390 2frvB 536 3.37e+01 1h2rL e.18.1.1 43291 1j8yF 297 3.38e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1yal 218 3.39e+01 1cs8A d.3.1.1 37025 1rdzA 337 3.42e+01 1frpA e.7.1.1 42882 1k7kA 221 3.48e+01 c.51.4.1 72104 1f9vA 347 3.53e+01 1bg2 c.37.1.9 59745 1qd6C 240 3.53e+01 1qd5A 1aj6 219 3.58e+01 1aj6 d.122.1.2 41106 1te5A 257 3.59e+01 5fbpA 335 3.63e+01 1frpA e.7.1.1 42873 1bn5 478 3.76e+01 1bn5 a.4.5.25 16224 d.127.1.1 41161 2omf 340 3.77e+01 2omf f.4.3.1 43749 3tss 194 3.79e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1dtyA 429 3.86e+01 1dtyA c.67.1.4 34495 1ooeA 236 3.87e+01 c.2.1.2 87196 1skyB 502 3.90e+01 1skyB a.69.1.1 18313 b.49.1.1 26478 c.37.1.11 32358 1musA 477 3.93e+01 c.55.3.4 79494 1g0oA 283 3.93e+01 1ybvA c.2.1.2 60181 1nuyA 337 3.95e+01 e.7.1.1 86213