# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ec7A 446 2.42e-01 1bqg c.1.11.2 29218 d.54.1.1 38862 1llnA 262 3.23e-01 d.165.1.1 84625 1uf5A 303 8.72e-01 1erzA 303 9.24e-01 1erzA d.160.1.2 59498 1c24A 263 9.57e-01 1c24A d.127.1.1 41148 1kafA 108 1.84e+00 d.199.1.1 68372 1ubeA 349 2.58e+00 c.37.1.11 88412 d.48.1.1 88413 1j1yA 136 3.49e+00 d.38.1.5 -9671 1j31A 262 3.69e+00 d.160.1.2 -11473 1crzA 403 4.68e+00 1crzA b.68.4.1 27629 c.51.2.1 33211 1hqsA 423 5.73e+00 1iso c.77.1.1 61154 1a05A 358 6.16e+00 1cnzA c.77.1.1 35059 1g7sA 594 6.23e+00 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1sczA 233 6.68e+00 c.43.1.1 -7326 1j1bA 420 6.74e+00 d.144.1.7 -11312 2dtr 226 6.75e+00 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1kzfA 230 6.93e+00 d.108.1.3 73354 1jyaA 130 6.95e+00 d.198.1.1 67453 1tmy 120 8.39e+00 1dbwA c.23.1.1 31083 1br9 194 8.73e+00 1br9 b.40.3.1 25235 1kq1A 77 8.91e+00 b.38.1.2 72848 1lxnA 99 9.06e+00 d.58.48.1 84737 1ujxA 119 1.13e+01 b.26.1.2 -3325 1t82A 155 1.15e+01 1ihrA 76 1.30e+01 1ihrA d.212.1.2 62392 1cqmA 101 1.38e+01 1ris d.58.14.1 39321 1m6yA 301 1.42e+01 a.60.13.1 78716 c.66.1.23 78717 1hyhA 309 1.43e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1louA 101 1.45e+01 1ris d.58.14.1 39323 1b24A 188 1.45e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1fw9A 164 1.48e+01 1fw9A d.190.1.1 60059 1ptf 88 1.49e+01 1ptf d.94.1.1 40549 1mgqA 83 1.60e+01 b.38.1.1 79099 1krhA 338 1.66e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1nzhA 282 1.74e+01 d.151.1.2 -11398 1amm 174 1.82e+01 1amm b.11.1.1 23587 b.11.1.1 23588 1eybA 471 1.83e+01 1ey2A b.82.1.4 28115 4gcr 174 1.90e+01 1amm b.11.1.1 23589 b.11.1.1 23590 1omiA 248 2.16e+01 a.4.5.4 87079 b.82.3.3 87080 1n27A 96 2.30e+01 b.34.9.2 -3585 1h6lA 353 2.31e+01 b.68.3.1 60687 1qwnA 1045 2.34e+01 a.8.3.1 -414 b.30.5.6 -3517 c.6.2.1 -6058 1mdl 359 2.36e+01 2mnr c.1.11.2 29247 d.54.1.1 38891 1mldA 314 2.41e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1uv7A 110 2.41e+01 unknown_sccs -10256 1xgsA 295 2.46e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1pg4A 652 2.54e+01 e.23.1.1 88067 1b6a 478 2.59e+01 1bn5 a.4.5.25 16223 d.127.1.1 41160 1qpcA 279 2.63e+01 1fgkA d.144.1.7 41685 2pooA 355 2.66e+01 1qlgA b.68.3.1 27626 1f89A 291 2.83e+01 d.160.1.1 64988 1hk9A 74 2.86e+01 b.38.1.2 83541 1qavA 90 2.89e+01 1qauA b.36.1.1 24777 1rvkA 382 2.91e+01 c.1.11.2 -5568 d.54.1.1 -9826 1dd9A 338 2.99e+01 1dd9A e.13.1.1 43254 1epfA 191 3.04e+01 2ncm b.1.1.4 21694 b.1.1.4 21695 1c8uA 285 3.05e+01 1c8uA d.38.1.3 38547 d.38.1.3 38548 2shpA 525 3.18e+01 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 1rn5A 177 3.20e+01 d.167.1.1 -11591 1is3A 135 3.24e+01 b.29.1.3 76773 2eifA 136 3.32e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1i52A 236 3.35e+01 1i52A c.68.1.13 61767 1v1rB 342 3.35e+01 1of4A 179 3.38e+01 b.18.1.18 86932 1bhdA 118 3.45e+01 1bkrA a.40.1.1 17398 1bmv2 374 3.52e+01 1bmv2 1qfhA 212 3.55e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1vjhA 122 3.56e+01 d.129.3.1 -11037 1h3fA 432 3.56e+01 c.26.1.1 76631 d.66.1.4 76632 1r5tA 142 3.69e+01 1v7zA 260 3.70e+01 unknown_sccs -6353 1i8fA 81 3.72e+01 1i8fA b.38.1.1 61959 1apmE 350 3.73e+01 1cdkA d.144.1.7 41628 1olsB 342 3.74e+01 c.36.1.7 -6919 c.48.1.2 -7529 1e2wA 251 3.78e+01 1hcz b.2.6.1 22466 b.84.2.2 28252 1st0A 337 3.84e+01 unknown_sccs -9014 unknown_sccs -9474 1jzuA 157 3.86e+01 b.60.1.1 84271 1rdqE 350 3.91e+01 d.144.1.7 -11336 1p3dA 475 3.93e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730