# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c24A	263	1.53e+00	1c24A	d.127.1.1	41148
1hqsA	423	4.09e+00	1iso	c.77.1.1	61154
1uthA	315	4.34e+00			
1ec7A	446	4.65e+00	1bqg	c.1.11.2	29218
				d.54.1.1	38862
1fehA	574	7.78e+00	1fehA	c.96.1.1	36015
				d.15.4.2	37690
				d.58.1.5	38998
1g7sA	594	8.95e+00	1g7rA	b.43.3.1	25712
				b.43.3.1	25713
				c.20.1.1	31032
				c.37.1.8	32147
1a05A	358	1.04e+01	1cnzA	c.77.1.1	35059
1llnA	262	1.13e+01		d.165.1.1	84625
1erzA	303	1.20e+01	1erzA	d.160.1.2	59498
1ogiA	303	1.22e+01		b.43.4.2	-4042
				c.25.1.1	-6587
1uf5A	303	1.25e+01			
1mnaA	298	2.20e+01		c.69.1.22	79322
1j31A	262	2.31e+01		d.160.1.2	-11473
1k0eA	453	2.31e+01		d.161.1.1	67938
1n0wA	243	2.36e+01		c.37.1.11	79772
1l1qA	186	2.41e+01		c.61.1.1	77653
1tmy	120	2.66e+01	1dbwA	c.23.1.1	31083
1uv7A	110	2.69e+01		unknown_sccs	-10256
1pg4A	652	2.73e+01		e.23.1.1	88067
1amm	174	3.30e+01	1amm	b.11.1.1	23587
				b.11.1.1	23588
4gcr	174	3.30e+01	1amm	b.11.1.1	23589
				b.11.1.1	23590
1lxnA	99	3.36e+01		d.58.48.1	84737
1qfhA	212	3.79e+01	1qfhA	b.1.18.10	21893
				b.1.18.10	21894
1vjzA	341	3.85e+01		c.1.8.3	-5318
1j6pA	418	3.86e+01		b.92.1.4	77089
				c.1.9.9	77090
1sczA	233	3.90e+01		c.43.1.1	-7326
1qhoA	686	3.90e+01	1cxlA	b.1.18.2	21844
				b.3.1.1	22513
				b.71.1.1	27751
				c.1.8.1	28738
1j1yA	136	3.91e+01		d.38.1.5	-9671