# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c24A	263	1.43e+00	1c24A	d.127.1.1	41148
1ec7A	446	2.77e+00	1bqg	c.1.11.2	29218
				d.54.1.1	38862
1ogiA	303	3.09e+00		b.43.4.2	-4042
				c.25.1.1	-6587
1c3jA	351	3.95e+00	1c3jA	c.87.1.1	35459
1hqsA	423	4.30e+00	1iso	c.77.1.1	61154
1sczA	233	7.69e+00		c.43.1.1	-7326
1a05A	358	7.96e+00	1cnzA	c.77.1.1	35059
1kafA	108	1.06e+01		d.199.1.1	68372
1g7sA	594	1.19e+01	1g7rA	b.43.3.1	25712
				b.43.3.1	25713
				c.20.1.1	31032
				c.37.1.8	32147
1que	303	1.40e+01	1fnc	b.43.4.2	25647
				c.25.1.1	31537
1go2A	304	1.53e+01		b.43.4.2	76243
				c.25.1.1	76244
1l1qA	186	1.53e+01		c.61.1.1	77653
1tmy	120	1.61e+01	1dbwA	c.23.1.1	31083
1uthA	315	1.61e+01			
1ad1A	266	1.76e+01	1aj2	c.1.21.1	29668
1hrdA	449	1.76e+01	1k89	c.2.1.7	30219
				c.58.1.1	33867
4gcr	174	1.82e+01	1amm	b.11.1.1	23589
				b.11.1.1	23590
1amm	174	1.87e+01	1amm	b.11.1.1	23587
				b.11.1.1	23588
1i50K	120	1.89e+01		d.74.3.2	61765
1lxnA	99	1.92e+01		d.58.48.1	84737
1bgvA	449	1.93e+01	1k89	c.2.1.7	30217
				c.58.1.1	33865
1vjzA	341	1.93e+01		c.1.8.3	-5318
1crzA	403	2.02e+01	1crzA	b.68.4.1	27629
				c.51.2.1	33211
1erzA	303	2.06e+01	1erzA	d.160.1.2	59498
1uf5A	303	2.07e+01			
1mnaA	298	2.09e+01		c.69.1.22	79322
1j1yA	136	2.19e+01		d.38.1.5	-9671
1qhoA	686	2.24e+01	1cxlA	b.1.18.2	21844
				b.3.1.1	22513
				b.71.1.1	27751
				c.1.8.1	28738
2pooA	355	2.24e+01	1qlgA	b.68.3.1	27626
1fehA	574	2.28e+01	1fehA	c.96.1.1	36015
				d.15.4.2	37690
				d.58.1.5	38998
1j31A	262	2.39e+01		d.160.1.2	-11473
1n0wA	243	2.39e+01		c.37.1.11	79772
1qv9A	283	2.41e+01		unknown_sccs	-6888
1t82A	155	2.43e+01			
1jixA	351	2.65e+01	1c3jA	c.87.1.1	63081
2dtr	226	2.76e+01	1bi0	a.4.5.24	16193
				a.76.1.1	18399
				b.34.1.2	24450
1llnA	262	2.84e+01		d.165.1.1	84625
1mgqA	83	2.84e+01		b.38.1.1	79099
1qhxA	178	2.86e+01	1qhsA	c.37.1.3	31936
1v02A	565	2.92e+01			
1jtaA	361	3.05e+01		b.80.1.1	71859
1olrA	224	3.07e+01		b.29.1.11	-3489
1hyhA	309	3.15e+01	1hyhA	c.2.1.5	30150
				d.162.1.1	42117
1i52A	236	3.35e+01	1i52A	c.68.1.13	61767
1huxA	270	3.48e+01	1huxA	c.55.1.5	61278
1h65A	270	3.55e+01		c.37.1.8	65640
1xyzA	347	3.64e+01	1taxA	c.1.8.3	28804
1uv7A	110	3.69e+01		unknown_sccs	-10256
1eybA	471	3.80e+01	1ey2A	b.82.1.4	28115
1fu1A	203	3.93e+01	1fu1B	b.59.1.1	27076
				h.1.11.1	45630
1szwA	379	3.96e+01		unknown_sccs	-10164