# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1pov1	302	2.89e+00	1pov1		
1ln1A	214	3.69e+00		d.129.3.2	74038
1l6xA	207	7.90e+00		b.1.1.2	73642
				b.1.1.2	73643
1j3aA	142	1.24e+01		c.21.1.1	77070
1iakB	185	1.30e+01	1iakB	b.1.1.2	21626
				d.19.1.1	38200
2tct	207	1.62e+01	2tct	a.4.1.9	16063
				a.121.1.1	19240
1i50K	120	2.09e+01		d.74.3.2	61765
1ik9A	213	2.15e+01		b.59.1.1	66176
				h.1.11.1	66177
4bcl	366	2.28e+01	4bcl	b.75.1.1	27968
1f3iA	481	2.40e+01	1b7eA		
1pn0A	665	2.43e+01		c.3.1.2	-5992
				c.47.1.10	-7513
				d.16.1.2	-9210
1hqsA	423	2.58e+01	1iso	c.77.1.1	61154
1msc	129	2.60e+01	1msc	d.85.1.1	40039
1cd31	152	2.77e+01	1cd31		
1qfhA	212	2.77e+01	1qfhA	b.1.18.10	21893
				b.1.18.10	21894
1us7B	265	2.93e+01		unknown_sccs	-1518
4gcr	174	3.13e+01	1amm	b.11.1.1	23589
				b.11.1.1	23590
1hfuA	503	3.62e+01		b.6.1.3	65827
				b.6.1.3	65828
				b.6.1.3	65829
1uthA	315	3.64e+01			
1amm	174	3.69e+01	1amm	b.11.1.1	23587
				b.11.1.1	23588
1fu1A	203	3.87e+01	1fu1B	b.59.1.1	27076
				h.1.11.1	45630
1ghqB	134	3.93e+01	1ghqB	g.18.1.1	60522
				g.18.1.1	60523