# List of top-scoring protein chains for T0216.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gv4A 528 5.61e-01 c.3.1.5 70589 c.3.1.5 70590 d.87.1.1 70591 1emsA 440 1.10e+00 1emsA d.13.1.1 37520 d.160.1.1 42086 1m6iA 493 1.40e+00 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 1d1gA 168 1.44e+00 1d1gA c.71.1.1 34889 1o57A 291 2.33e+00 unknown_sccs -249 c.61.1.1 -7960 1p4aA 285 2.47e+00 unknown_sccs -253 c.61.1.1 -7964 1sdmA 369 2.47e+00 1ogpA 393 5.63e+00 b.1.18.6 -2744 d.176.1.1 -11708 1vjzA 341 5.87e+00 c.1.8.3 -5318 1a0eA 443 7.01e+00 1a0cA c.1.15.3 29537 1i5nA 146 7.38e+00 1i5nA a.24.10.3 61805 1mpyA 307 7.87e+00 1mpyA d.32.1.3 38508 d.32.1.3 38509 1pv9A 348 8.22e+00 c.55.2.1 -7610 d.127.1.1 -11000 1rewC 135 9.29e+00 g.7.1.3 -12531 1h3jA 341 9.31e+00 a.93.1.1 83469 1su4A 994 1.08e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1bwr 233 1.21e+01 1wab c.23.10.3 31344 1bwp 233 1.29e+01 1wab c.23.10.3 31342 1pf3A 498 1.30e+01 b.6.1.3 88049 b.6.1.3 88050 b.6.1.3 88051 1es9A 232 1.35e+01 1wab c.23.10.3 31340 1wab 232 1.37e+01 1wab c.23.10.3 31341 1kv7A 488 1.49e+01 b.6.1.3 68873 b.6.1.3 68874 b.6.1.3 68875 1bwq 233 1.50e+01 1wab c.23.10.3 31343 1bhe 376 1.55e+01 1bhe b.80.1.3 28030 1ajsA 412 1.57e+01 1ajsA c.67.1.1 34276 1m7jA 484 1.62e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1ey3A 258 1.68e+01 c.14.1.3 64911 1mj3A 260 1.68e+01 c.14.1.3 79183 2dubA 261 1.69e+01 1nzyA c.14.1.3 30912 1rk6A 496 1.73e+01 b.92.1.6 -5087 b.92.1.6 -5088 c.1.9.11 -5435 1fnoA 417 1.75e+01 c.56.5.4 75841 d.58.19.1 70145 1e2vA 251 1.79e+01 1hcz b.2.6.1 22468 b.84.2.2 28254 1fxwF 229 1.81e+01 c.23.10.3 65058 1ly8A 343 1.84e+01 a.93.1.1 74340 1exqA 154 1.88e+01 1b9dA c.55.3.2 33646 1r1uA 106 1.92e+01 1kxu 333 1.94e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1v4yA 496 2.06e+01 b.92.1.6 -5089 b.92.1.6 -5090 c.1.9.11 -5436 1e2wA 251 2.08e+01 1hcz b.2.6.1 22466 b.84.2.2 28252 1jkw 323 2.08e+01 1jkw a.74.1.1 18356 a.74.1.1 18357 2hlcA 230 2.13e+01 5ptp b.47.1.2 26074 1gotA 350 2.15e+01 1cipA a.66.1.1 18213 c.37.1.8 32096 2cro 71 2.15e+01 1r69 a.35.1.2 17038 1og5A 475 2.20e+01 a.104.1.1 86982 1oe0A 230 2.21e+01 c.37.1.1 -6976 1lykA 343 2.23e+01 a.93.1.1 74346 1ot3A 250 2.26e+01 c.37.1.1 87400 1f2jA 370 2.30e+01 1fbaA c.1.10.1 29154 1e2zA 251 2.31e+01 1hcz b.2.6.1 22477 b.84.2.2 28263 1dujA 187 2.35e+01 1dujA d.135.1.1 41449 1ex4A 239 2.35e+01 1b9dA b.34.7.1 24627 c.55.3.2 33670 1go4A 205 2.36e+01 d.135.1.1 70292 1s2hA 206 2.37e+01 d.135.1.1 -11119 1kqfA 1015 2.37e+01 b.52.2.2 72871 c.81.1.1 72872 1cnv 299 2.39e+01 1cnv c.1.8.5 28989 1deqA 390 2.39e+01 i.9.1.1 45987 1kliH 254 2.41e+01 b.47.1.2 77435 1klqA 197 2.46e+01 d.135.1.1 68689 1a0cA 438 2.50e+01 1a0cA c.1.15.3 29529 1cfmA 251 2.55e+01 1hcz b.2.6.1 22471 b.84.2.2 28257 1aru 344 2.61e+01 1arv a.93.1.1 18589 1k6yA 288 2.65e+01 a.4.10.1 68239 c.55.3.2 68240 1q90A 292 2.66e+01 b.2.6.1 -2906 b.84.2.2 -5016 unknown_sccs -12161 1fqjA 325 2.70e+01 1cipA a.66.1.1 18215 c.37.1.8 32098 1axdA 209 2.72e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1byeA 213 2.75e+01 1gnwA a.45.1.1 17732 c.47.1.5 33026 1rjqA 496 2.79e+01 b.92.1.6 -5081 b.92.1.6 -5082 c.1.9.11 -5432 1ct9A 553 2.93e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1lycA 343 2.95e+01 a.93.1.1 74344 1pw4A 451 2.97e+01 unknown_sccs -12259 1inp 400 2.98e+01 1inp e.7.1.1 42972 1yaiA 151 3.00e+01 1yaiA b.1.8.1 22289 1lwjA 441 3.02e+01 b.71.1.1 74303 c.1.8.1 74304 1pn5A 159 3.08e+01 unknown_sccs -1196 1j1nA 492 3.10e+01 c.94.1.1 83978 1obxA 79 3.22e+01 b.36.1.1 86783 1r6jA 82 3.29e+01 b.36.1.1 -3732 1gt6A 269 3.31e+01 c.69.1.17 76342 1s72Q 96 3.41e+01 1jj2P 95 3.48e+01 1ffkN b.34.5.1 63101 1jyhA 157 3.56e+01 d.60.1.3 71956 1h641 75 3.63e+01 1c8yA 265 3.65e+01 2ebn c.1.8.5 28995 1m8vA 77 3.68e+01 b.38.1.1 78814 1fhe 217 3.68e+01 1b8xA a.45.1.1 17726 c.47.1.5 33020 1o3uA 135 3.77e+01 a.24.16.3 86615 1r9oA 477 3.84e+01 1obbA 480 3.90e+01 c.2.1.5 86760 d.162.1.2 86761 1pex 207 3.92e+01 1gen b.66.1.1 27540 1obzA 166 3.98e+01 b.36.1.1 86786 b.36.1.1 86787 1aew 174 4.00e+01 2fha a.25.1.1 16676