# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q5qA 259 1.22e-01 d.153.1.4 -11433 1rypG 244 1.08e+00 d.153.1.4 41938 1mkmA 249 1.55e+00 a.4.5.33 79242 d.110.2.2 79243 1jx4A 352 2.15e+00 unknown_sccs -10188 unknown_sccs -11898 1rypC 244 2.25e+00 1rypC d.153.1.4 41934 1rvkA 382 2.67e+00 c.1.11.2 -5568 d.54.1.1 -9826 1ev7A 317 2.81e+00 1ev7B c.52.1.9 33315 1iakA 199 2.91e+00 1iakA b.1.1.2 21625 d.19.1.1 38199 1q6hA 224 3.17e+00 d.26.1.1 -9487 1mdwA 328 4.22e+00 d.3.1.3 84934 1r6wA 322 4.53e+00 c.1.11.2 -5563 d.54.1.1 -9821 1guzA 310 5.19e+00 c.2.1.5 65586 d.162.1.1 65587 1b7yA 350 5.46e+00 1pysA d.104.1.1 40776 1l3lA 234 6.11e+00 a.4.6.2 73541 d.110.5.1 73542 1pysA 350 6.15e+00 1pysA d.104.1.1 40775 1o8bA 219 6.78e+00 unknown_sccs 81180 d.58.40.1 81181 1k7kA 221 6.84e+00 c.51.4.1 72104 1azpA 66 8.19e+00 1azpA b.34.13.1 37467 3fruA 269 8.45e+00 1agdA b.1.1.2 20657 d.19.1.1 38150 1te5A 257 8.81e+00 1rypB 250 8.89e+00 1rypB d.153.1.4 41933 1l1zA 274 1.00e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1e3dB 542 1.00e+01 1h2rL e.18.1.1 59189 1frpA 335 1.02e+01 1frpA e.7.1.1 42875 1dkzA 219 1.09e+01 1dkzA unknown_sccs -445 unknown_sccs -3060 1s72Q 96 1.12e+01 1vjzA 341 1.13e+01 c.1.8.3 -5318 1h4pA 408 1.14e+01 c.1.8.3 -5314 1gpmA 525 1.16e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1f2tB 148 1.19e+01 1f2tB 1gmyA 261 1.23e+01 d.3.1.1 76236 1js8A 394 1.24e+01 a.86.1.1 67219 b.112.1.1 67220 1jj2P 95 1.25e+01 1ffkN b.34.5.1 63101 1q8iA 783 1.28e+01 c.55.3.5 -7635 e.8.1.1 -11885 1dgfA 497 1.28e+01 1cf9A e.5.1.1 42782 1nuyA 337 1.30e+01 e.7.1.1 86213 1dlwA 116 1.33e+01 1dlyA a.1.1.1 14982 1nu5A 370 1.36e+01 c.1.11.2 -5565 d.54.1.1 -9823 1k6wA 426 1.40e+01 b.92.1.2 68236 c.1.9.5 68237 1ktaA 365 1.41e+01 e.17.1.1 77533 1omrA 201 1.41e+01 a.39.1.5 -854 1at3A 247 1.42e+01 1at3A b.57.1.1 27021 1eaf 243 1.43e+01 1eaf c.43.1.1 32617 1nbwA 607 1.44e+01 c.8.6.1 80393 c.55.1.6 80394 c.55.1.6 80395 1ekfA 365 1.45e+01 1ekfA e.17.1.1 59445 1dysA 348 1.56e+01 1bvwA c.6.1.1 30669 1e19A 314 1.57e+01 1b7bA c.73.1.1 34967 1r6jA 82 1.66e+01 b.36.1.1 -3732 1nteA 82 1.68e+01 b.36.1.1 86163 1h6zA 913 1.71e+01 c.1.12.2 70906 c.8.1.1 70907 d.142.1.5 70908 1f9vA 347 1.73e+01 1bg2 c.37.1.9 59745 1c1dA 355 1.78e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1e79H 146 1.79e+01 1e79H a.2.10.1 15721 b.93.1.1 28438 1i7qA 519 1.80e+01 1qdlA d.161.1.1 61901 1gtmA 419 1.82e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1giqA 413 1.83e+01 d.166.1.1 76224 d.166.1.1 76225 1oyeA 1049 1.89e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1sdjA 310 2.04e+01 d.21.1.2 -9420 d.21.1.2 -9421 2napA 723 2.07e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1bqyA 234 2.08e+01 5ptp b.47.1.2 26332 1ceo 343 2.11e+01 1ceo c.1.8.3 28808 1byqA 228 2.14e+01 1yer d.122.1.1 41100 1a05A 358 2.15e+01 1cnzA c.77.1.1 35059 1dmhA 311 2.17e+01 1dmhA b.3.6.1 22633 1nvmB 312 2.18e+01 c.2.1.3 86251 d.81.1.1 86252 1rreA 200 2.18e+01 unknown_sccs -9106 1mj5A 302 2.22e+01 c.69.1.8 -8326 1eqcA 394 2.25e+01 1cz1A c.1.8.3 28811 1hbq 183 2.29e+01 1aqb b.60.1.1 27078 1li5A 461 2.38e+01 a.27.1.1 73912 c.26.1.1 73913 1np6A 174 2.40e+01 c.37.1.10 85954 1914 232 2.41e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1xgsA 295 2.41e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1inp 400 2.47e+01 1inp e.7.1.1 42972 1gcyA 527 2.49e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1fhuA 320 2.49e+01 1fhuA c.1.11.2 29234 d.54.1.1 38878 1r2zA 274 2.50e+01 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1rxxA 421 2.52e+01 unknown_sccs -10982 1vjqA 79 2.54e+01 unknown_sccs -13478 1h2kA 349 2.56e+01 b.82.2.6 76572 1j6pA 418 2.57e+01 b.92.1.4 77089 c.1.9.9 77090 1qyaA 307 2.60e+01 1d4xG 126 2.63e+01 1d0nA d.109.1.1 59109 1fr2B 134 2.67e+01 d.4.1.1 83257 1r62A 160 2.67e+01 1nzoA 363 2.73e+01 b.105.1.1 -2933 e.3.1.1 -11784 1nox 205 2.73e+01 1nox d.90.1.1 40242 1rec 201 2.78e+01 1rec a.39.1.5 17326 1nm1G 125 2.81e+01 d.109.1.1 80653 1em2A 229 2.83e+01 1em2A d.129.3.2 41321 1gesA 450 2.84e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1nj4A 363 2.85e+01 b.105.1.1 80545 e.3.1.1 80546 1ryp2 233 2.89e+01 1ryp2 1e3aB 560 2.95e+01 1ajqB 1v7rA 186 2.97e+01 c.51.4.1 -7546 1gk9B 557 2.98e+01 1jssA 224 3.00e+01 d.129.3.2 71844 1s6yA 450 3.08e+01 1fs0G 230 3.09e+01 1fs0G c.49.2.1 59999 3pmgA 561 3.10e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1ecrA 309 3.11e+01 1ecrA e.2.1.1 42678 1lla 628 3.11e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1j9yA 385 3.14e+01 1j9yA c.1.8.3 62791 1f89A 291 3.15e+01 d.160.1.1 64988 1oltA 457 3.15e+01 unknown_sccs -5688 1qfhA 212 3.16e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1g9oA 91 3.17e+01 1pdr b.36.1.1 60400 1odzA 386 3.22e+01 c.1.8.3 86889 1f35A 162 3.25e+01 1f35A b.94.1.1 59628 1jb7B 260 3.25e+01 1otcB b.40.4.3 62839 1im8A 244 3.31e+01 c.66.1.14 66212 1pkp 150 3.31e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 1hqz1 141 3.32e+01 1a65A 504 3.34e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1dqnA 230 3.34e+01 1dqnA c.61.1.1 34067 1k38A 254 3.35e+01 e.3.1.1 84303 1emvB 134 3.38e+01 1bxiB d.4.1.1 37135 1nfkA 325 3.40e+01 1a3qA b.1.18.1 21929 b.2.5.3 22444 1wab 232 3.46e+01 1wab c.23.10.3 31341 1ur5A 309 3.53e+01 c.2.1.5 -5910 d.162.1.1 -11477 1es9A 232 3.59e+01 1wab c.23.10.3 31340 2fhi 147 3.67e+01 1fit d.13.1.1 37505 1rypH 205 3.68e+01 d.153.1.4 41876 1cuk 203 3.70e+01 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1mk4A 157 3.72e+01 d.108.1.1 84979 1ec7A 446 3.73e+01 1bqg c.1.11.2 29218 d.54.1.1 38862 1fit 147 3.82e+01 1fit d.13.1.1 37499 1ush 550 3.85e+01 1ush d.114.1.1 40923 d.159.1.2 42079 1uxy 340 3.85e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1j1nA 492 3.92e+01 c.94.1.1 83978