# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h0oA 390 8.19e-03 a.25.1.2 70845 1xsm 390 1.33e-02 1xsm a.25.1.2 16804 1i5nA 146 1.34e-01 1i5nA a.24.10.3 61805 1kgsA 225 8.28e-01 a.4.6.1 68596 c.23.1.1 68597 1vjzA 341 8.79e-01 c.1.8.3 -5318 1jlnA 297 1.34e+00 1pty c.45.1.2 63172 1jm6A 407 1.46e+00 a.29.5.1 66876 d.122.1.4 66877 1rztA 331 2.11e+00 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1mgtA 174 2.14e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1dz4A 414 2.25e+00 1phd a.104.1.1 18903 1l1zA 274 5.35e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1ebmA 317 5.79e+00 1ebmA a.96.1.3 18751 d.129.1.2 41300 1qmqA 414 6.35e+00 1phd a.104.1.1 18907 1dcs 311 6.52e+00 1dcs b.82.2.1 28124 1o57A 291 6.56e+00 unknown_sccs -249 c.61.1.1 -7960 1r2zA 274 7.95e+00 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1yaiA 151 8.17e+00 1yaiA b.1.8.1 22289 1rtwA 220 8.65e+00 unknown_sccs -1904 1r6wA 322 8.90e+00 c.1.11.2 -5563 d.54.1.1 -9821 1jmvA 141 1.02e+01 c.26.2.4 66897 1m3qA 317 1.09e+01 a.96.1.3 -1288 d.129.1.2 -11006 1ryt 190 1.13e+01 1ryt a.25.1.1 16646 g.41.5.1 45245 1h6hA 143 1.13e+01 d.189.1.1 65681 1kt6A 183 1.31e+01 b.60.1.1 84466 1nteA 82 1.32e+01 b.36.1.1 86163 1mml 265 1.32e+01 1mml e.8.1.2 43015 1peeA 180 1.37e+01 1h6gA 256 1.49e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1f20A 435 1.53e+01 b.43.4.1 64932 c.25.1.4 64933 1r6jA 82 1.62e+01 b.36.1.1 -3732 1lkoA 191 1.64e+01 a.25.1.1 78063 g.41.5.1 78064 1q4mA 221 1.68e+01 unknown_sccs -1910 1ayx 492 1.70e+01 1ayx a.102.1.1 18825 1ux5A 411 1.75e+01 unknown_sccs -1768 1btkA 169 1.85e+01 1btkA b.55.1.1 26959 1hbq 183 1.88e+01 1aqb b.60.1.1 27078 1nw3A 416 2.00e+01 c.66.1.31 86288 1n83A 270 2.04e+01 a.123.1.1 80276 1fh0A 221 2.07e+01 1cs8A d.3.1.1 59832 1b71A 191 2.15e+01 1ryt a.25.1.1 16647 g.41.5.1 45246 1gcuA 295 2.32e+01 1gcuA c.2.1.3 30063 d.81.1.4 39978 1fpzA 212 2.35e+01 1fpzA c.45.1.1 59976 1mp9A 198 2.41e+01 a.74.1.2 -1127 a.74.1.2 -1128 1euoA 180 2.57e+01 1np1A b.60.1.1 27163 1tib 269 2.62e+01 3tgl c.69.1.17 34738 1fxlA 167 2.66e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1pm1X 180 2.68e+01 1v7wA 807 2.77e+01 1q9uA 130 2.78e+01 unknown_sccs -11025 1n0wA 243 2.80e+01 c.37.1.11 79772 1qhtA 775 2.94e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1lrzA 426 2.95e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1ktgA 138 3.01e+01 d.113.1.1 72972 1lc0A 294 3.10e+01 c.2.1.3 73823 d.81.1.4 73824 1gt6A 269 3.11e+01 c.69.1.17 76342 1jzuA 157 3.16e+01 b.60.1.1 84271 1qstA 160 3.17e+01 1yghA d.108.1.1 40804 1e42A 258 3.29e+01 1e42A b.1.10.1 22316 d.105.1.1 40792 1gxjA 186 3.30e+01 d.215.1.1 70707 1kliH 254 3.59e+01 b.47.1.2 77435 1qvzA 237 3.59e+01 c.23.16.2 -6537 1f3lA 321 3.68e+01 1g6q2 c.66.1.6 59630 1dmuA 299 3.74e+01 1dmuA c.52.1.4 33294 1jhnA 424 3.77e+01 b.29.1.12 70060 b.104.1.1 66722