# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bdg 451 1.30e-01 1qhaA c.55.1.3 33461 c.55.1.3 33462 1l1zA 274 1.11e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1g0uL 241 1.32e+00 d.153.1.4 41894 1ryp1 222 1.36e+00 1ryp1 1i5nA 146 1.64e+00 1i5nA a.24.10.3 61805 1r2zA 274 2.05e+00 1kgsA 225 2.22e+00 a.4.6.1 68596 c.23.1.1 68597 1yaiA 151 2.40e+00 1yaiA b.1.8.1 22289 1h4pA 408 2.66e+00 1vjzA 341 2.94e+00 1t3lA 337 3.55e+00 1e19A 314 3.67e+00 1b7bA c.73.1.1 34967 1btkB 169 4.66e+00 1btkA b.55.1.1 26960 1j8yF 297 5.40e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1btkA 169 6.51e+00 1btkA b.55.1.1 26959 1j8mF 297 6.63e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1jkgB 250 7.72e+00 d.17.4.2 66796 1oo2A 119 8.83e+00 1aoa 275 9.20e+00 1aoa a.40.1.1 17396 a.40.1.1 17397 1jmvA 141 9.39e+00 c.26.2.4 66897 1p9rA 418 9.94e+00 1klqA 197 1.04e+01 d.135.1.1 68689 1gw5A 621 1.04e+01 a.118.1.10 70629 1nteA 82 1.05e+01 b.36.1.1 86163 1r6jA 82 1.12e+01 1go4A 205 1.17e+01 d.135.1.1 70292 1rztA 331 1.34e+01 1l7mA 211 1.35e+01 c.108.1.4 73664 1o1xA 155 1.38e+01 c.121.1.1 86553 1qmqA 414 1.49e+01 1phd a.104.1.1 18907 1o08A 221 1.50e+01 c.108.1.6 86525 1n99A 166 1.52e+01 b.36.1.1 85459 b.36.1.1 85460 1hqcA 324 1.59e+01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1f3yA 165 1.60e+01 d.113.1.1 59635 2a0b 125 1.64e+01 2a0b a.24.10.1 16630 1ordA 730 1.68e+01 1ordA c.23.1.4 31274 c.67.1.5 34503 d.125.1.1 41124 1jn5B 250 1.75e+01 d.17.4.2 66922 1qu6A 179 1.76e+01 1qu6A d.50.1.1 38784 d.50.1.1 38785 1c4kA 730 1.81e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1dcs 311 1.85e+01 1dcs b.82.2.1 28124 1lvhA 221 1.86e+01 c.108.1.6 74282 1cs0B 382 1.87e+01 1c3oB c.8.3.1 30740 c.23.16.1 31417 1zug 71 2.04e+01 1r69 a.35.1.2 17041 1jotA 133 2.07e+01 1jotA 1ku8A 133 2.12e+01 3adk 195 2.15e+01 1zin c.37.1.1 31885 1m26A 133 2.20e+01 1i58A 189 2.30e+01 1b3qA d.122.1.3 61773 1jm6A 407 2.30e+01 a.29.5.1 66876 d.122.1.4 66877 1q4mA 221 2.30e+01 1o1fC 147 2.32e+01 i.15.1.1 80997 1j97A 211 2.48e+01 1f5sA c.108.1.4 62753 1gdtA 183 2.49e+01 2rslA a.4.1.2 16021 c.53.1.1 33348 1dz4A 414 2.55e+01 1phd a.104.1.1 18903 1a9xB 379 2.55e+01 1c3oB c.8.3.1 30732 c.23.16.1 31409 1kwhA 492 2.66e+01 c.94.1.1 68876 1c3oB 382 2.72e+01 1c3oB c.8.3.1 30744 c.23.16.1 31421 1q42A 201 2.73e+01 1yal 218 2.80e+01 1cs8A d.3.1.1 37025 1xsm 390 2.80e+01 1xsm a.25.1.2 16804 8fabA 212 2.91e+01 8fabA b.1.1.1 19772 b.1.1.2 20882 1jacA 133 2.94e+01 1jotA 1ofhA 310 2.95e+01 c.37.1.20 86948 1o57A 291 2.99e+01 1p41A 291 2.99e+01 1h0oA 390 3.05e+01 a.25.1.2 70845 1dguA 183 3.06e+01 1dguA a.39.1.5 17333 1f5sA 211 3.09e+01 1f5sA c.108.1.4 59656 1oyeA 1049 3.14e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1ajsA 412 3.25e+01 1ajsA c.67.1.1 34276 2cro 71 3.28e+01 1r69 a.35.1.2 17038 1a41 234 3.37e+01 1a41 d.163.1.2 42174 1f3lA 321 3.37e+01 1g6q2 c.66.1.6 59630 1ecfB 504 3.37e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1qc7A 101 3.44e+01 1qc7A a.118.14.1 18456 1dlc 584 3.44e+01 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1dujA 187 3.46e+01 1dujA d.135.1.1 41449 1etc 110 3.54e+01 1awcA a.4.5.21 16162 1bdo 80 3.59e+01 1bdo b.84.1.1 28214 1yge 839 3.60e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1k0wA 231 3.63e+01 c.74.1.1 77220 1lwyA 324 3.67e+01 a.96.1.3 78285 d.129.1.2 78286 1j1nA 492 3.75e+01 c.94.1.1 83978 1rqlA 267 3.77e+01 1n0wA 243 3.78e+01 c.37.1.11 79772 1ugxA 133 3.83e+01 1gk8I 140 3.88e+01 d.73.1.1 65242