# List of top-scoring protein chains for T0216.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gv4A 528 1.17e+00 c.3.1.5 70589 c.3.1.5 70590 d.87.1.1 70591 1d1gA 168 2.03e+00 1d1gA c.71.1.1 34889 1emsA 440 2.29e+00 1emsA d.13.1.1 37520 d.160.1.1 42086 1o57A 291 2.37e+00 1p4aA 285 2.52e+00 1m6iA 493 2.94e+00 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 1vjzA 341 4.65e+00 1i5nA 146 5.12e+00 1i5nA a.24.10.3 61805 1su4A 994 5.41e+00 1f2jA 370 6.31e+00 1fbaA c.1.10.1 29154 1h3jA 341 7.89e+00 a.93.1.1 83469 1pf3A 498 8.64e+00 b.6.1.3 88049 b.6.1.3 88050 b.6.1.3 88051 1a0eA 443 8.86e+00 1a0cA c.1.15.3 29537 1kv7A 488 9.85e+00 b.6.1.3 68873 b.6.1.3 68874 b.6.1.3 68875 1pv9A 348 1.01e+01 1mpyA 307 1.06e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1rewC 135 1.12e+01 1ogpA 393 1.14e+01 1a0cA 438 1.24e+01 1a0cA c.1.15.3 29529 1m7jA 484 1.25e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1bwr 233 1.32e+01 1wab c.23.10.3 31344 1rk6A 496 1.34e+01 1ly8A 343 1.40e+01 a.93.1.1 74340 1bwp 233 1.41e+01 1wab c.23.10.3 31342 1bhe 376 1.43e+01 1bhe b.80.1.3 28030 1es9A 232 1.45e+01 1wab c.23.10.3 31340 1wab 232 1.47e+01 1wab c.23.10.3 31341 1gowA 489 1.55e+01 1qvbA c.1.8.4 28981 1bwq 233 1.61e+01 1wab c.23.10.3 31343 1r1uA 106 1.64e+01 1v4yA 496 1.67e+01 1lykA 343 1.78e+01 a.93.1.1 74346 1rjqA 496 1.89e+01 1deqA 390 2.02e+01 i.9.1.1 45987 2cro 71 2.08e+01 1r69 a.35.1.2 17038 1aru 344 2.09e+01 1arv a.93.1.1 18589 1axdA 209 2.14e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 1byeA 213 2.15e+01 1gnwA a.45.1.1 17732 c.47.1.5 33026 1lycA 343 2.22e+01 a.93.1.1 74344 1fnoA 417 2.29e+01 c.56.5.4 75841 d.58.19.1 70145 1mj3A 260 2.40e+01 c.14.1.3 79183 1ey3A 258 2.40e+01 c.14.1.3 64911 2dubA 261 2.41e+01 1nzyA c.14.1.3 30912 1yaiA 151 2.42e+01 1yaiA b.1.8.1 22289 1exqA 154 2.45e+01 1b9dA c.55.3.2 33646 1qpdA 278 2.70e+01 1fmk d.144.1.7 41687 1lwjA 441 2.76e+01 b.71.1.1 74303 c.1.8.1 74304 1cnv 299 2.85e+01 1cnv c.1.8.5 28989 1ot3A 250 3.00e+01 c.37.1.1 87400 1oe0A 230 3.04e+01 1pn5A 159 3.04e+01 1okiA 210 3.15e+01 1c8yA 265 3.19e+01 2ebn c.1.8.5 28995 1ex4A 239 3.20e+01 1b9dA b.34.7.1 24627 c.55.3.2 33670 1ct9A 553 3.21e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1r2zA 274 3.28e+01 1l1zA 274 3.28e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1obxA 79 3.36e+01 b.36.1.1 86783 1kxu 333 3.40e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1r6jA 82 3.45e+01 1h641 75 3.47e+01 1jj2P 95 3.50e+01 1ffkN b.34.5.1 63101 1m8vA 77 3.51e+01 b.38.1.1 78814 1gc5A 467 3.53e+01 1gc5A c.72.1.3 60429 1e2vA 251 3.53e+01 1hcz b.2.6.1 22468 b.84.2.2 28254 1k6yA 288 3.59e+01 a.4.10.1 68239 c.55.3.2 68240 1gt6A 269 3.61e+01 c.69.1.17 76342 1dujA 187 3.63e+01 1dujA d.135.1.1 41449 1s2hA 206 3.63e+01 1go4A 205 3.65e+01 d.135.1.1 70292 1jkw 323 3.67e+01 1jkw a.74.1.1 18356 a.74.1.1 18357 1obbA 480 3.68e+01 c.2.1.5 86760 d.162.1.2 86761 1kliH 254 3.69e+01 b.47.1.2 77435 1gotA 350 3.72e+01 1cipA a.66.1.1 18213 c.37.1.8 32096 1klqA 197 3.79e+01 d.135.1.1 68689 1a0p 290 3.92e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1fxwF 229 3.95e+01 c.23.10.3 65058