# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rypG 244 1.56e-01 d.153.1.4 41938 1vjzA 341 3.44e-01 1q5qA 259 4.70e-01 1rypC 244 5.37e-01 1rypC d.153.1.4 41934 1e19A 314 8.69e-01 1b7bA c.73.1.1 34967 1ush 550 2.74e+00 1ush d.114.1.1 40923 d.159.1.2 42079 1rypB 250 2.87e+00 1rypB d.153.1.4 41933 1h4pA 408 3.73e+00 1r6wA 322 4.54e+00 1cnv 299 4.73e+00 1cnv c.1.8.5 28989 1dgfA 497 5.38e+00 1cf9A e.5.1.1 42782 1914 232 6.46e+00 1914 d.49.1.1 83028 d.49.1.1 83029 1at3A 247 6.76e+00 1at3A b.57.1.1 27021 1iakA 199 7.03e+00 1iakA b.1.1.2 21625 d.19.1.1 38199 1gmyA 261 7.68e+00 d.3.1.1 76236 1jj2P 95 8.07e+00 1ffkN b.34.5.1 63101 1nu5A 370 8.19e+00 1mkmA 249 8.26e+00 a.4.5.33 79242 d.110.2.2 79243 1q6hA 224 8.69e+00 1gdhA 320 1.17e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355 1ec7A 446 1.23e+01 1bqg c.1.11.2 29218 d.54.1.1 38862 1euwA 152 1.30e+01 1dupA b.85.4.1 28349 1cl8A 276 1.32e+01 1ckqA c.52.1.1 33230 1se9A 126 1.36e+01 1p7tA 731 1.37e+01 1frpA 335 1.38e+01 1frpA e.7.1.1 42875 1mdwA 328 1.38e+01 d.3.1.3 84934 1ev7A 317 1.48e+01 1ev7B c.52.1.9 33315 1jx4A 352 1.50e+01 e.8.1.5 67405 1oacA 727 1.51e+01 1oacA b.30.2.1 24390 d.17.2.1 38007 d.17.2.1 38008 d.82.1.1 40003 1te5A 257 1.79e+01 1l1zA 274 1.85e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1dozA 309 1.86e+01 1ak1 c.92.1.1 35592 1b7yA 350 1.88e+01 1pysA d.104.1.1 40776 1gcyA 527 1.90e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 2napA 723 1.91e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1nrlA 316 1.91e+01 1nvmB 312 1.92e+01 c.2.1.3 86251 d.81.1.1 86252 1dkzA 219 1.95e+01 1dkzA e.20.1.1 43314 1f9vA 347 1.96e+01 1bg2 c.37.1.9 59745 1lla 628 2.01e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1hp1A 516 2.05e+01 d.114.1.1 70976 d.159.1.2 70977 1dekA 241 2.09e+01 1dekA c.37.1.1 31842 1kliH 254 2.16e+01 b.47.1.2 77435 1a7tA 232 2.17e+01 1a7tA d.157.1.1 42041 1r2zA 274 2.26e+01 1odzA 386 2.26e+01 c.1.8.3 86889 1danH 254 2.26e+01 5ptp b.47.1.2 26292 1l3lA 234 2.28e+01 a.4.6.2 73541 d.110.5.1 73542 1q0bA 367 2.31e+01 1nuyA 337 2.33e+01 e.7.1.1 86213 1o04A 500 2.36e+01 c.82.1.1 86508 1j9yA 385 2.37e+01 1j9yA c.1.8.3 62791 1qtnA 164 2.38e+01 1pauA c.17.1.1 30999 1rvkA 382 2.41e+01 1e3aB 560 2.45e+01 1ajqB 1nm8A 616 2.46e+01 c.43.1.3 85872 c.43.1.3 85873 1gk9B 557 2.46e+01 2cpl 165 2.50e+01 2cpl b.62.1.1 27420 1mpxA 615 2.59e+01 b.18.1.13 85041 c.69.1.21 85042 1awqA 164 2.61e+01 2cpl b.62.1.1 27461 1awsA 164 2.63e+01 2cpl b.62.1.1 27431 1m6eX 359 2.73e+01 1im8A 244 2.76e+01 c.66.1.14 66212 1q8iA 783 2.78e+01 1e5dA 402 2.78e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1e3dB 542 2.82e+01 1h2rL e.18.1.1 59189 1byqA 228 2.82e+01 1yer d.122.1.1 41100 1eqcA 394 2.99e+01 1cz1A c.1.8.3 28811 1pszA 303 3.10e+01 1toaA c.92.2.2 35600 1pzwA 80 3.16e+01 1qd6C 240 3.19e+01 1qd5A 1jssA 224 3.21e+01 d.129.3.2 71844 1gzgA 337 3.24e+01 c.1.10.3 70805 1gal 583 3.26e+01 1gpeA c.3.1.2 30386 d.16.1.1 37950 1bqyA 234 3.45e+01 5ptp b.47.1.2 26332 1b4kA 337 3.47e+01 1b4kA c.1.10.3 29184 1mk4A 157 3.51e+01 d.108.1.1 84979 1rreA 200 3.56e+01 1hbzA 498 3.59e+01 1cf9A e.5.1.1 60937 1dmhA 311 3.60e+01 1dmhA b.3.6.1 22633 1kjqA 391 3.60e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1gweA 503 3.71e+01 e.5.1.1 70667 1iw7C 1119 3.73e+01 e.29.1.1 71474 1owfA 99 3.78e+01 a.55.1.1 87487 1l7aA 318 3.85e+01 c.69.1.25 77772 1vns 609 3.87e+01 1vns a.111.1.3 19061 1omrA 201 3.93e+01 1g8pA 350 3.96e+01 1g8pA c.37.1.20 60376