PFRMAT RR
TARGET T0216
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MTFEEFKDRLFALAKKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFN
VEIKVLKDGKTGTFRTQVLENPEKCFEEALSNLQVKDSEEKEYFFEGGKE
YREMETYVGRFEKLSVKEKMDMAKKAHESAAKDERVVMVPTVMYKDMVIK
KIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPEDLNPEE
IGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLDLMEMFIPMISAENVQK
NLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLEN
GVLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNLMLMPGEKSFEELLKEM
DRGVVITEVEGMHAGANSISGEFSLFAKGYWVENGEIAHGVEDITISGNF
LDLLRKIVLVGNDVKVSQHTIAPSVLVEVLDVAGK
236 330 0 8 0.653
237 330 0 8 0.63
236 331 0 8 0.614
241 331 0 8 0.608
241 330 0 8 0.608
237 246 0 8 0.608
244 331 0 8 0.602
236 421 0 8 0.602
240 330 0 8 0.591
236 246 0 8 0.588
361 377 0 8 0.585
236 334 0 8 0.582
350 382 0 8 0.579
361 399 0 8 0.576
241 375 0 8 0.573
241 421 0 8 0.57
374 400 0 8 0.567
374 397 0 8 0.564
244 330 0 8 0.561
361 395 0 8 0.546
22 54 0 8 0.543
54 238 0 8 0.534
360 395 0 8 0.531
361 374 0 8 0.522
240 375 0 8 0.522
24 54 0 8 0.522
244 421 0 8 0.519
237 331 0 8 0.519
236 375 0 8 0.519
377 399 0 8 0.517
361 398 0 8 0.514
247 374 0 8 0.514
244 375 0 8 0.514
238 375 0 8 0.508
372 399 0 8 0.505
240 331 0 8 0.505
246 375 0 8 0.502
366 375 0 8 0.498
362 375 0 8 0.498
331 421 0 8 0.495
215 246 0 8 0.495
233 330 0 8 0.492
374 396 0 8 0.486
24 246 0 8 0.483
283 292 0 8 0.481
234 325 0 8 0.481
231 329 0 8 0.481
378 395 0 8 0.478
360 375 0 8 0.478
236 247 0 8 0.475
236 325 0 8 0.472
24 151 0 8 0.472
360 374 0 8 0.469
238 366 0 8 0.469
236 378 0 8 0.466
231 374 0 8 0.466
361 370 0 8 0.463
24 63 0 8 0.463
241 378 0 8 0.46
360 378 0 8 0.457
236 400 0 8 0.457
34 361 0 8 0.457
334 378 0 8 0.454
244 325 0 8 0.454
238 362 0 8 0.454
234 244 0 8 0.454
330 375 0 8 0.451
325 378 0 8 0.451
240 421 0 8 0.448
234 375 0 8 0.448
244 400 0 8 0.445
246 331 0 8 0.442
246 330 0 8 0.442
236 328 0 8 0.442
212 393 0 8 0.442
374 394 0 8 0.439
353 382 0 8 0.436
285 400 0 8 0.433
275 400 0 8 0.433
238 331 0 8 0.433
331 375 0 8 0.43
233 375 0 8 0.43
376 394 0 8 0.427
375 421 0 8 0.427
361 375 0 8 0.427
330 421 0 8 0.427
285 374 0 8 0.427
234 331 0 8 0.427
175 236 0 8 0.427
24 50 0 8 0.427
378 421 0 8 0.424
331 422 0 8 0.424
250 361 0 8 0.424
241 400 0 8 0.424
240 334 0 8 0.424
334 421 0 8 0.421
237 334 0 8 0.421
215 240 0 8 0.421
24 244 0 8 0.421
357 378 0 8 0.418
325 366 0 8 0.418
325 334 0 8 0.418
250 377 0 8 0.418
241 422 0 8 0.418
192 236 0 8 0.418
52 326 0 8 0.418
247 400 0 8 0.415
244 334 0 8 0.415
238 264 0 8 0.415
233 396 0 8 0.415
54 63 0 8 0.415
24 236 0 8 0.415
371 400 0 8 0.412
356 374 0 8 0.412
270 334 0 8 0.412
241 334 0 8 0.412
234 330 0 8 0.412
233 334 0 8 0.412
175 361 0 8 0.412
175 215 0 8 0.412
244 360 0 8 0.409
241 325 0 8 0.409
237 375 0 8 0.409
234 421 0 8 0.409
283 325 0 8 0.407
246 362 0 8 0.407
239 400 0 8 0.407
234 397 0 8 0.407
375 400 0 8 0.404
334 422 0 8 0.404
334 400 0 8 0.404
237 421 0 8 0.404
231 400 0 8 0.404
54 375 0 8 0.404
24 331 0 8 0.404
377 394 0 8 0.401
376 395 0 8 0.401
359 374 0 8 0.401
244 374 0 8 0.401
237 422 0 8 0.401
236 374 0 8 0.401
231 396 0 8 0.401
231 244 0 8 0.401
240 357 0 8 0.398
234 334 0 8 0.398
63 241 0 8 0.398
325 375 0 8 0.395
306 373 0 8 0.395
34 395 0 8 0.395
374 399 0 8 0.392
334 357 0 8 0.392
236 422 0 8 0.392
212 241 0 8 0.392
331 378 0 8 0.389
310 330 0 8 0.389
246 334 0 8 0.389
34 399 0 8 0.389
361 397 0 8 0.386
361 396 0 8 0.386
244 283 0 8 0.386
236 368 0 8 0.386
361 371 0 8 0.384
330 400 0 8 0.384
244 422 0 8 0.384
238 250 0 8 0.384
22 361 0 8 0.384
334 396 0 8 0.381
255 361 0 8 0.381
236 362 0 8 0.381
215 236 0 8 0.381
127 358 0 8 0.381
24 238 0 8 0.381
286 329 0 8 0.378
242 358 0 8 0.378
240 325 0 8 0.378
236 335 0 8 0.378
192 241 0 8 0.378
377 400 0 8 0.375
377 397 0 8 0.375
330 422 0 8 0.375
272 396 0 8 0.375
263 396 0 8 0.375
240 400 0 8 0.375
239 375 0 8 0.375
238 254 0 8 0.375
233 422 0 8 0.375
163 330 0 8 0.375
159 325 0 8 0.375
373 398 0 8 0.372
366 395 0 8 0.372
360 376 0 8 0.372
283 374 0 8 0.372
246 325 0 8 0.372
244 328 0 8 0.372
238 334 0 8 0.372
24 237 0 8 0.372
373 397 0 8 0.37
359 372 0 8 0.37
236 283 0 8 0.37
227 360 0 8 0.37
61 375 0 8 0.37
32 143 0 8 0.37
371 399 0 8 0.367
334 360 0 8 0.367
295 323 0 8 0.367
246 421 0 8 0.367
238 422 0 8 0.367
233 331 0 8 0.367
232 329 0 8 0.367
232 244 0 8 0.367
41 394 0 8 0.367
34 376 0 8 0.367
361 400 0 8 0.364
361 378 0 8 0.364
355 382 0 8 0.364
328 356 0 8 0.364
264 404 0 8 0.364
END