# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nv8A 284 3.03e-01 c.66.1.30 86224 1j97A 211 6.90e-01 1f5sA c.108.1.4 62753 1l7mA 211 8.30e-01 c.108.1.4 73664 1jj2P 95 1.14e+00 1ffkN b.34.5.1 63101 1s72Q 96 1.19e+00 1yaiA 151 1.51e+00 1yaiA b.1.8.1 22289 1v7wA 807 1.87e+00 1gcuA 295 2.15e+00 1gcuA c.2.1.3 30063 d.81.1.4 39978 1nteA 82 2.36e+00 b.36.1.1 86163 1r6jA 82 2.95e+00 b.36.1.1 -3732 2cro 71 2.96e+00 1r69 a.35.1.2 17038 1lc0A 294 2.99e+00 c.2.1.3 73823 d.81.1.4 73824 1h54A 754 3.53e+00 a.102.1.4 60634 b.30.5.3 60635 1fh0A 221 3.66e+00 1cs8A d.3.1.1 59832 1fnd 314 4.35e+00 1fnc b.43.4.2 25626 c.25.1.1 31516 1fnc 314 4.52e+00 1fnc b.43.4.2 25627 c.25.1.1 31517 1sv6A 269 5.04e+00 1aoa 275 5.72e+00 1aoa a.40.1.1 17396 a.40.1.1 17397 1a8p 258 6.57e+00 1fdr b.43.4.2 25654 c.25.1.1 31544 1o2dA 371 7.59e+00 e.22.1.2 86591 1a9xB 379 8.02e+00 1c3oB c.8.3.1 30732 c.23.16.1 31409 1jkmB 361 9.00e+00 1jkmA c.69.1.2 34634 1aszB 490 9.12e+00 1b8aA b.40.4.1 25241 d.104.1.1 40762 1t5jA 313 1.03e+01 unknown_sccs -1951 1r64A 481 1.13e+01 b.18.1.20 -3151 c.41.1.1 -7297 1je5A 206 1.17e+01 1je5A b.40.4.7 62909 1jm6A 407 1.19e+01 a.29.5.1 66876 d.122.1.4 66877 1lz1 130 1.23e+01 3lzt d.2.1.2 36415 1fvgA 199 1.24e+01 1fvaA d.58.28.1 39408 1jsf 130 1.25e+01 3lzt d.2.1.2 36410 1gpr 162 1.29e+01 1gpr b.84.3.1 28267 1qmqA 414 1.35e+01 1phd a.104.1.1 18907 1j1nA 492 1.36e+01 c.94.1.1 83978 1umgA 362 1.36e+01 1oalA 151 1.49e+01 b.1.8.1 86739 1yal 218 1.66e+01 1cs8A d.3.1.1 37025 1tph1 247 1.89e+01 1amk 1f8gA 384 1.93e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1oeyJ 107 1.99e+01 d.15.2.2 -9168 1qfhA 212 2.04e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 3cla 213 2.08e+01 3cla c.43.1.1 32610 1ujnA 348 2.11e+01 e.22.1.1 -11998 1ux5A 411 2.11e+01 unknown_sccs -1768 1r2rA 248 2.14e+01 c.1.1.1 -5147 1ubi 76 2.18e+01 1ubi d.15.1.1 37584 1oxxK 353 2.21e+01 b.40.6.3 -3969 c.37.1.12 -7187 1lyxA 248 2.28e+01 c.1.1.1 78304 1r0wA 286 2.33e+01 c.37.1.12 -7158 1i4wA 353 2.37e+01 c.66.1.24 66028 2bltA 361 2.44e+01 1gceA e.3.1.1 42739 1elrA 131 2.49e+01 1a17 a.118.8.1 19209 1q7zA 566 2.73e+01 c.1.21.2 -5638 c.1.26.1 -5666 1bgvA 449 2.74e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1j7nA 776 2.81e+01 d.92.1.14 66409 d.92.1.14 66410 d.166.1.1 66411 1gotB 340 2.88e+01 1tbgA b.69.4.1 27648 1e0tA 470 3.08e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1kktA 511 3.13e+01 a.102.2.1 68687 1mjnA 179 3.14e+01 c.62.1.1 79210 1sj1A 66 3.17e+01 1ogwA 76 3.17e+01 d.15.1.1 87001 1us5A 314 3.17e+01 c.94.1.1 -8686 1hrdA 449 3.21e+01 1k89 c.2.1.7 30219 c.58.1.1 33867 1ppn 212 3.26e+01 1cs8A d.3.1.1 37004 1tfe 145 3.31e+01 1tfe d.43.1.1 38680 1oxsC 353 3.35e+01 b.40.6.3 87519 c.37.1.12 87520 1ut9A 609 3.36e+01 a.102.1.2 -1326 b.1.18.2 -2710 8fabA 212 3.58e+01 8fabA b.1.1.1 19772 b.1.1.2 20882 1erjA 393 3.70e+01 1erjA b.69.4.1 27660 1khqA 212 3.71e+01 d.3.1.1 -8868 1pi4A 358 3.80e+01 e.3.1.1 -11774 1rzfL 213 3.82e+01 b.1.1.1 -2147 b.1.1.2 -2438 3pmgA 561 3.84e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1pzlA 237 3.91e+01 1uf2A 1019 3.98e+01 unknown_sccs -12036 1io2A 213 3.98e+01 1ekeA c.55.3.1 62612