Best Alignments for T0216

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1emsA/T0216-1emsA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1emsA/T0216-1emsA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.7352e+006.3015e-01 1emsA d.160.1.1
d.13.1.1
1kafA/T0216-1kafA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1kafA/T0216-1kafA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.8524e+007.0771e-01 d.199.1.1
1j0dA/T0216-1j0dA-t2k-local-adpstyle5.a2m 1j0dA/T0216-1j0dA-t2k-local-adpstyle5.al 1.5124e+011.0848e+01 c.79.1.1
1j0eA/T0216-1j0eA-t2k-local-adpstyle5.a2m 1j0eA/T0216-1j0eA-t2k-local-adpstyle5.al 1.5468e+011.1133e+01 c.79.1.1
1h4pA/T0216-1h4pA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1h4pA/T0216-1h4pA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.7543e+013.1356e+00 c.1.8.3
1vjzA/T0216-1vjzA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1vjzA/T0216-1vjzA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.7713e+012.2634e+00 c.1.8.3
1danL/1edmB-T0216-fssp-local-adpstyle5.a2m 1danL/1edmB-T0216-fssp-local-adpstyle5.al 2.3072e+017.8600e+00 1edmB g.3.11.1
g.32.1.1
1sdmA/T0216-1sdmA-t2k-global-adpstyle1.a2m 1sdmA/T0216-1sdmA-t2k-global-adpstyle1.al 2.4145e+016.0439e+00
1s3iA/T0216-1s3iA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1s3iA/T0216-1s3iA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.5619e+013.9852e+00 c.65.1.1
b.46.1.1
1kn0A/T0216-1kn0A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1kn0A/T0216-1kn0A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.7697e+013.4055e+00 d.50.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001