# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kafA 108 3.59e-01 d.199.1.1 68372 1s3iA 310 6.09e-01 b.46.1.1 -4111 c.65.1.1 -8042 1ggxA 223 6.24e-01 1ggxA d.22.1.1 38367 1emsA 440 6.94e-01 1emsA d.13.1.1 37520 d.160.1.1 42086 1dar 691 8.15e-01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1ut7A 171 9.70e-01 unknown_sccs -4724 1fgp 70 1.10e+00 1g3p b.37.1.1 24795 1ndbA 596 1.12e+00 c.43.1.3 80411 c.43.1.3 80412 1fnmA 691 1.72e+00 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1kxrA 339 1.81e+00 d.3.1.3 73175 1dcuA 357 1.88e+00 1frpA e.7.1.1 42943 1vjzA 341 2.07e+00 c.1.8.3 -5318 1frvB 536 2.99e+00 1h2rL e.18.1.1 43296 1oltA 457 3.37e+00 unknown_sccs -5688 1xgsA 295 3.69e+00 1bn5 a.4.5.25 16216 d.127.1.1 41153 1iakB 185 4.28e+00 1iakB b.1.1.2 21626 d.19.1.1 38200 1g61A 228 4.29e+00 1g61A d.126.1.1 41126 1nulA 152 4.38e+00 1nulA c.61.1.1 34011 1iakA 199 4.75e+00 1iakA b.1.1.2 21625 d.19.1.1 38199 1iawA 317 5.23e+00 c.52.1.9 62126 1ev7B 317 5.32e+00 1ev7B c.52.1.9 33316 1ts3A 194 5.38e+00 1aw7A b.40.2.2 25168 d.15.6.1 37757 1nm8A 616 5.98e+00 c.43.1.3 85872 c.43.1.3 85873 1azpA 66 6.01e+00 1azpA b.34.13.1 37467 1bqyA 234 6.02e+00 5ptp b.47.1.2 26332 1f3iA 481 6.43e+00 1b7eA 1kanA 253 6.49e+00 1knyA a.24.16.1 75878 d.218.1.1 75879 1kn0A 212 6.56e+00 d.50.1.3 77444 1rvkA 382 6.69e+00 c.1.11.2 -5568 d.54.1.1 -9826 1mrj 247 7.63e+00 1mrj d.165.1.1 42177 1ei1A 391 7.92e+00 1aj6 d.14.1.3 37570 d.122.1.2 41104 1r2zA 274 8.87e+00 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1l1zA 274 8.87e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1i9aA 182 9.41e+00 1i9aA d.113.1.2 62082 1deuA 277 9.51e+00 1theB d.3.1.1 37085 1fa3A 96 9.86e+00 1molA d.17.1.1 37996 1o97D 320 1.02e+01 c.26.2.3 81233 c.31.1.2 81234 1jq3A 296 1.05e+01 c.66.1.17 67079 1azqA 66 1.07e+01 1azpA b.34.13.1 37469 1inlA 296 1.07e+01 c.66.1.17 66220 1ev7A 317 1.11e+01 1ev7B c.52.1.9 33315 1enp 312 1.13e+01 1enp c.2.1.2 29906 1te5A 257 1.14e+01 1g0oA 283 1.16e+01 1ybvA c.2.1.2 60181 1r62A 160 1.16e+01 1ybvA 283 1.19e+01 1ybvA c.2.1.2 29948 1a6dA 545 1.23e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1hzdA 272 1.24e+01 c.14.1.3 65969 1eno 312 1.30e+01 1enp c.2.1.2 29905 1kjqA 391 1.30e+01 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1ghpA 258 1.31e+01 1btl e.3.1.1 60520 1ci0A 228 1.33e+01 1ci0A b.45.1.1 25750 1musA 477 1.34e+01 c.55.3.4 79494 1lxnA 99 1.38e+01 d.58.48.1 84737 1v84A 253 1.39e+01 1jssA 224 1.46e+01 d.129.3.2 71844 1q5qA 259 1.51e+01 d.153.1.4 -11433 1ua4A 455 1.55e+01 c.72.1.3 -8416 1guzA 310 1.56e+01 c.2.1.5 65586 d.162.1.1 65587 2frvB 536 1.59e+01 1h2rL e.18.1.1 43291 1eqcA 394 1.69e+01 1cz1A c.1.8.3 28811 1h4pA 408 1.73e+01 c.1.8.3 -5314 1cz1A 394 1.75e+01 1cz1A c.1.8.3 28839 1udmA 149 1.77e+01 1f35A 162 1.85e+01 1f35A b.94.1.1 59628 1j93A 353 1.86e+01 c.1.22.1 66454 1d7oA 297 1.91e+01 1enp c.2.1.2 29907 1ur5A 309 1.94e+01 c.2.1.5 -5910 d.162.1.1 -11477 1dmhA 311 1.98e+01 1dmhA b.3.6.1 22633 1r4pB 70 2.05e+01 b.40.2.1 -3887 1op0A 234 2.15e+01 1ihfA 99 2.16e+01 1huuA a.55.1.1 17893 1owfA 99 2.16e+01 a.55.1.1 87487 1c0dA 358 2.19e+01 1eceA c.1.8.3 28815 1nvmB 312 2.21e+01 c.2.1.3 86251 d.81.1.1 86252 1s6yA 450 2.28e+01 1l2lA 457 2.28e+01 c.72.1.3 77656 1eceA 358 2.32e+01 1eceA c.1.8.3 28813 1sap 66 2.33e+01 1azpA b.34.13.1 37472 1nrlA 316 2.50e+01 a.123.1.1 -1668 1n6zA 105 2.56e+01 unknown_sccs 85369 1hwxA 501 2.57e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1txlA 215 2.69e+01 1o1zA 234 2.72e+01 c.1.18.3 86555 1k7kA 221 2.74e+01 c.51.4.1 72104 3tss 194 2.79e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1q7zA 566 2.84e+01 c.1.21.2 -5638 c.1.26.1 -5666 1ca4A 168 2.92e+01 1d0aB b.8.1.1 23238 h.1.2.1 45445 1eyzA 392 2.92e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1ex2A 189 2.92e+01 1ex2A c.51.4.2 33225 1ez1A 392 2.95e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 1qj5A 429 3.02e+01 1dtyA c.67.1.4 34493 1q8iA 783 3.03e+01 c.55.3.5 -7635 e.8.1.1 -11885 1ajsA 412 3.04e+01 1ajsA c.67.1.1 34276 1h2aL 567 3.06e+01 1h2rL e.18.1.1 43299 1alq 266 3.07e+01 1btl e.3.1.1 42707 1pauA 147 3.10e+01 1pauA c.17.1.1 30994 1s0aA 429 3.13e+01 c.67.1.4 -8201 1q1rA 431 3.20e+01 c.3.1.5 -6048 c.3.1.5 -6049 d.87.1.1 -10502 2mbr 340 3.20e+01 2mbr d.145.1.2 41749 d.146.1.1 41762 2bosA 68 3.22e+01 2bosA b.40.2.1 25025 1ughI 82 3.26e+01 1ugiA d.17.5.1 38133 1ca9A 192 3.30e+01 1d0aB b.8.1.1 23244 h.1.2.1 45451 1dtyA 429 3.31e+01 1dtyA c.67.1.4 34495 1ovnA 248 3.36e+01 a.71.1.1 -1096 c.47.1.7 -7477 1itkA 731 3.37e+01 a.93.1.3 71417 a.93.1.3 71418 1gtmA 419 3.38e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1wab 232 3.39e+01 1wab c.23.10.3 31341 1giqA 413 3.43e+01 d.166.1.1 76224 d.166.1.1 76225 1rr9A 200 3.43e+01 unknown_sccs -9100 1usuA 260 3.47e+01 unknown_sccs -9045 1nbaA 264 3.49e+01 1nbaA unknown_sccs 31753 1es9A 232 3.55e+01 1wab c.23.10.3 31340 1hzoA 271 3.55e+01 e.3.1.1 71092 1jobA 162 3.59e+01 1f35A b.94.1.1 63207 1yal 218 3.60e+01 1cs8A d.3.1.1 37025 1bn5 478 3.61e+01 1bn5 a.4.5.25 16224 d.127.1.1 41161 1nuyA 337 3.66e+01 e.7.1.1 86213 1bo1A 416 3.67e+01 1bo1A d.143.1.2 41591 1czyA 168 3.68e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1cp3A 277 3.73e+01 1pauA c.17.1.1 30992 1m6kA 251 3.77e+01 e.3.1.1 78695 1czyC 168 3.83e+01 1d0aB b.8.1.1 23222 h.1.2.1 45429 1b8zA 90 3.85e+01 1huuA a.55.1.1 17902 1aw7A 194 3.85e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1fd9A 213 3.89e+01 1fd9A d.26.1.1 59771 1umnA 165 3.94e+01 a.25.1.1 -656