a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0216 TM0727, Thermotoga maritima
- gi|15643490|ref|NP_228536.1|_1:218 pmbA-related protein [Thermotoga maritima MSB8]
- gi|7462925|pir||E72342 pmbA-related protein - Thermotoga maritima (strain MSB8) [Taxonomy]
- gi|4981252|gb|AAD35809.1| pmbA-related protein [Thermotoga maritima MSB8]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MTFEEFKDRLFALAKKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFR
   2 MTFEEFKDRLFALAKKNGVEVQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFR


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 TQVLENPEKCFEEALSNLQVKDSEEKEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAHESA
   2 TQVLENPEKCFEEALSNLQVKDSEEKEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAHESA


             140       150       160       170       180       190     
              |         |         |         |         |         |     
   1 AKDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPED
   2 AKDERVVMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFAMAIARDANPRSGSWYELARTPED


        200       210            
         |         |            
   1 LNPEEIGKRAAEEAISLIGSKTI....
   2 LNPEEIGKRAAEEAISLIGSKTIpsg.