# List of top-scoring protein chains for T0216.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1uthB	315	9.57e+00			
1okiA	210	1.09e+01		b.11.1.1	-3030
				b.11.1.1	-3031
1ln1A	214	1.18e+01		d.129.3.2	74038
1fehA	574	1.30e+01	1fehA	c.96.1.1	36015
				d.15.4.2	37690
				d.58.1.5	38998
1utbB	315	1.30e+01			
1nmuB	104	1.31e+01		d.79.3.1	80666
1t0kB	105	1.31e+01			
1h42A	304	1.32e+01		b.43.4.2	-4041
				c.25.1.1	-6586
1uthA	315	1.34e+01			
1utbA	315	1.35e+01			
1ogiA	303	1.36e+01		b.43.4.2	-4042
				c.25.1.1	-6587
1bqeA	295	1.50e+01		b.43.4.2	64760
				c.25.1.1	64761
1inlA	296	1.52e+01		c.66.1.17	66220
1j1uA	306	1.73e+01		c.26.1.1	83980
1i6uA	130	1.96e+01		d.140.1.1	61850
1cd31	152	2.00e+01	1cd31		
1dfbH	229	2.40e+01	1igtB	b.1.1.1	19811
				b.1.1.2	20921
1knqA	175	2.58e+01		c.37.1.17	72786
1jymA	183	2.68e+01		d.167.1.1	71957
1f5tA	121	2.71e+01	1bi0	a.4.5.24	16203
				a.76.1.1	18409
1i5iA	174	2.74e+01	1amm	b.11.1.1	61786
				b.11.1.1	61787
1amm	174	2.74e+01	1amm	b.11.1.1	23587
				b.11.1.1	23588
1mg2A	390	2.79e+01		b.69.2.1	79059
1fwzA	226	3.26e+01		a.4.5.24	60077
				a.76.1.1	60078
				b.34.1.2	60079
1g3yA	226	3.28e+01		a.4.5.24	65136
				a.76.1.1	65137
				b.34.1.2	65138
2mtaH	373	3.29e+01	2bbkH	b.69.2.1	27636
1qoyA	318	3.30e+01	1qoyA	h.4.4.1	45788
1c0wA	225	3.33e+01	1bi0	a.4.5.24	16211
				a.76.1.1	18417
				b.34.1.2	24455
2dtr	226	3.34e+01	1bi0	a.4.5.24	16193
				a.76.1.1	18399
				b.34.1.2	24450
1d3e1	285	3.42e+01			
1aym1	285	3.42e+01	1aym1		
1ig3A	263	3.45e+01	1ig3A	b.82.6.1	62358
				c.100.1.1	62359
1fneB	224	3.87e+01	1iakB	b.1.1.2	59898
				d.19.1.1	59899
1fngB	224	3.92e+01	1iakB	b.1.1.2	59906
				d.19.1.1	59907
1g7sA	594	3.96e+01	1g7rA	b.43.3.1	25712
				b.43.3.1	25713
				c.20.1.1	31032
				c.37.1.8	32147
1mat	264	3.98e+01	1c24A	d.127.1.1	41152