# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ec7A	446	1.06e+00	1bqg	c.1.11.2	29218
				d.54.1.1	38862
1hqsA	423	1.97e+00	1iso	c.77.1.1	61154
1c24A	263	2.72e+00	1c24A	d.127.1.1	41148
1uyrA	737	2.85e+00		c.14.1.4	-6258
				c.14.1.4	-6259
1st0A	337	1.03e+01		unknown_sccs	-9014
				unknown_sccs	-9474
1kafA	108	1.13e+01		d.199.1.1	68372
1n0wA	243	1.13e+01		c.37.1.11	79772
1erzA	303	1.13e+01	1erzA	d.160.1.2	59498
1uf5A	303	1.16e+01			
1k0eA	453	1.26e+01		d.161.1.1	67938
1uthA	315	1.29e+01			
1ogiA	303	1.41e+01		b.43.4.2	-4042
				c.25.1.1	-6587
1g7sA	594	1.62e+01	1g7rA	b.43.3.1	25712
				b.43.3.1	25713
				c.20.1.1	31032
				c.37.1.8	32147
1hrdA	449	1.74e+01	1k89	c.2.1.7	30219
				c.58.1.1	33867
1vjzA	341	1.79e+01		c.1.8.3	-5318
1olrA	224	1.79e+01		b.29.1.11	-3489
1c3jA	351	1.91e+01	1c3jA	c.87.1.1	35459
1apmE	350	1.93e+01	1cdkA	d.144.1.7	41628
1llnA	262	2.03e+01		d.165.1.1	84625
1chuA	540	2.09e+01	1chuA	a.7.3.1	16325
				c.3.1.4	30424
				d.168.1.1	42307
1f74A	293	2.10e+01	1nal3	c.1.10.1	29079
1efdN	266	2.31e+01	1efdN	c.92.2.1	35597
1orvA	728	2.32e+01		b.70.3.1	87354
				c.69.1.24	87355
1j1yA	136	2.32e+01		d.38.1.5	-9671
1o4uA	285	2.54e+01		c.1.17.1	86624
				d.41.2.1	86625
1hyhA	309	2.84e+01	1hyhA	c.2.1.5	30150
				d.162.1.1	42117
1sczA	233	2.85e+01		c.43.1.1	-7326
1rdqE	350	2.86e+01		d.144.1.7	-11336
1v02A	565	3.01e+01			
1l1qA	186	3.05e+01		c.61.1.1	77653
1b1cA	181	3.11e+01	1amoA	c.23.5.2	31212
1tmy	120	3.13e+01	1dbwA	c.23.1.1	31083
1t82A	155	3.17e+01			
1b24A	188	3.21e+01	1b24A	d.95.2.1	40573
				d.95.2.1	40574
1lxnA	99	3.26e+01		d.58.48.1	84737
1ri5A	298	3.36e+01		unknown_sccs	-8063
1uv7A	110	3.36e+01		unknown_sccs	-10256
1a05A	358	3.50e+01	1cnzA	c.77.1.1	35059
1p3dA	475	3.59e+01		c.5.1.1	87728
				c.59.1.1	87729
				c.72.2.1	87730
1j31A	262	3.65e+01		d.160.1.2	-11473
1rn5A	177	3.70e+01		d.167.1.1	-11591
1bza	262	3.73e+01	1btl	e.3.1.1	42701
1mnaA	298	3.75e+01		c.69.1.22	79322
1iysA	262	3.87e+01		e.3.1.1	-11760
1ubeA	349	3.95e+01		c.37.1.11	88412
				d.48.1.1	88413