# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1us7B	265	1.41e+00		unknown_sccs	-1518
1ik9A	213	2.36e+00		b.59.1.1	66176
				h.1.11.1	66177
1cd31	152	4.30e+00	1cd31		
1knqA	175	4.73e+00		c.37.1.17	72786
1ln1A	214	6.80e+00		d.129.3.2	74038
1vgyA	393	7.14e+00		c.56.5.4	-7882
				d.58.19.1	-10106
1hqsA	423	7.23e+00	1iso	c.77.1.1	61154
4gcr	174	7.30e+00	1amm	b.11.1.1	23589
				b.11.1.1	23590
1amm	174	8.31e+00	1amm	b.11.1.1	23587
				b.11.1.1	23588
1m5iA	125	8.72e+00		h.4.13.1	78648
2dtr	226	8.98e+00	1bi0	a.4.5.24	16193
				a.76.1.1	18399
				b.34.1.2	24450
2bbkH	355	1.05e+01	2bbkH	b.69.2.1	27634
1br1B	150	1.41e+01	1wdcC	a.39.1.5	17309
1ihbA	162	1.60e+01	1bd8	d.211.1.1	19161
1g7sA	594	1.70e+01	1g7rA	b.43.3.1	25712
				b.43.3.1	25713
				c.20.1.1	31032
				c.37.1.8	32147
1okiA	210	1.72e+01		b.11.1.1	-3030
				b.11.1.1	-3031
1qfhA	212	2.08e+01	1qfhA	b.1.18.10	21893
				b.1.18.10	21894
1vk0A	206	2.09e+01		c.55.3.5	-7647
1umhA	184	2.22e+01		unknown_sccs	-3127
1tmy	120	2.30e+01	1dbwA	c.23.1.1	31083
1r72A	211	2.33e+01		unknown_sccs	-215
				unknown_sccs	-5981
1ufkA	254	2.37e+01		unknown_sccs	-8103
1t6aA	126	3.09e+01			
1kafA	108	3.25e+01		d.199.1.1	68372
1hkfA	122	3.32e+01		b.1.1.1	83553
2gsaA	432	3.34e+01	2gsaA	c.67.1.4	34446
1p99A	295	3.49e+01		c.94.1.1	-8697
1q6hA	224	3.54e+01		d.26.1.1	-9487
1ms9A	648	3.72e+01		b.29.1.15	85088
				b.68.1.1	85089