# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1t62A	166	9.69e-04			
1ihrA	76	2.84e+00	1ihrA	d.212.1.2	62392
1i1kA	309	4.46e+00	1daaA	e.17.1.1	61533
1ky3A	182	5.34e+00		c.37.1.8	73193
1v2bA	177	6.19e+00			
1fviA	297	6.82e+00	1fviA	b.40.4.6	25364
				d.142.2.1	41578
1khiA	176	7.19e+00		b.34.5.2	77408
				b.40.4.5	77409
1r6xA	395	7.91e+00		b.122.1.3	-5125
				c.26.1.5	-6620
1ov3A	138	8.82e+00		b.34.2.1	87451
				b.34.2.1	87452
1iyeA	309	9.16e+00		e.17.1.1	83786
1g8fA	511	9.99e+00	1g8fA	b.122.1.3	60348
				c.26.1.5	60349
				c.37.1.15	60350
1bco	327	1.07e+01	1bco	b.48.1.1	26431
				c.55.3.3	33676
1odkA	235	1.09e+01		c.56.2.1	86863
1pueE	89	1.10e+01	1awcA	a.4.5.21	16165
1fjgQ	105	1.20e+01	1fjfQ	b.40.4.5	25352
1p9kA	79	1.24e+01		unknown_sccs	-10238
2occH	85	1.29e+01	2occH	a.51.1.1	17796
1r0pA	312	1.43e+01		d.144.1.7	-11377
1eu1A	780	1.50e+01	1dmr	b.52.2.2	26903
				c.81.1.1	35311
1v54H	85	1.77e+01		a.51.1.1	-979
2cpgA	45	1.84e+01	2cpgA	unknown_sccs	17455
1e3pA	757	1.85e+01	1e3hA	a.4.9.1	16258
				b.40.4.5	25328
				d.14.1.4	37574
				d.14.1.4	37575
				d.52.3.1	38811
				d.101.1.1	40697
				d.101.1.1	40698
1gmuA	143	1.99e+01		b.107.1.1	65335
				d.58.38.1	65336
1fzyA	149	2.16e+01		d.20.1.1	65072
1ng2A	193	2.20e+01		b.34.2.1	85660
				b.34.2.1	85661
1s3iA	310	2.24e+01		b.46.1.1	-4111
				c.65.1.1	-8042
1kamA	194	2.27e+01		c.26.1.3	72254
1dm9A	133	2.41e+01	1dm9A	d.66.1.3	39560
1sfe	180	2.46e+01	1sfe	a.4.2.1	16073
				c.55.7.1	33748
1ry6A	360	2.62e+01		c.37.1.9	-7111
1i7kA	179	2.64e+01	1u9aA	d.20.1.1	61889
1oz9A	150	2.72e+01		unknown_sccs	-10588
1xgsA	295	2.74e+01	1bn5	a.4.5.25	16216
				d.127.1.1	41153
1py5A	326	2.88e+01			
1m1lA	236	2.88e+01		unknown_sccs	-11674
1qgvA	142	2.98e+01	1qgvA	c.47.1.8	33056
1ia8A	289	2.99e+01	1ia8A	d.144.1.7	62112
1mdc	133	3.03e+01	1hmt	b.60.1.2	27198
1i2kA	269	3.05e+01		e.17.1.1	-11995
1su4A	994	3.11e+01		b.82.7.1	-4927
				c.108.1.7	-6854
				d.220.1.1	-11668
				f.33.1.1	-12333
1eqcA	394	3.14e+01	1cz1A	c.1.8.3	28811
1iw7C	1119	3.20e+01		e.29.1.1	71474
1blxA	326	3.23e+01	1hcl	d.144.1.7	41596
1g5cA	170	3.29e+01	1g5cA	c.53.2.1	60264
1lfaA	187	3.35e+01	1ido	c.62.1.1	34122
1k47A	337	3.38e+01		d.14.1.5	72040
				d.58.26.4	72041
1bkpA	278	3.44e+01	1bkpA	d.117.1.1	41029
1earA	147	3.45e+01		b.107.1.1	64875
				d.58.38.1	64876
1nt4A	391	3.45e+01		c.60.1.2	-7942
1mjnA	179	3.50e+01		c.62.1.1	79210
2sns	149	3.55e+01	1snc	b.40.1.1	24860
1l6oA	95	3.59e+01		b.36.1.1	84534
1eulA	994	3.65e+01	1eulA		
1l4iA	206	3.69e+01		b.1.11.1	73564
				b.7.2.1	73565
1fjgD	209	3.81e+01	1c05A	d.66.1.2	39553
1mv3A	213	3.87e+01		b.34.2.1	-3555
1et0A	269	3.90e+01	1et0A	e.17.1.1	43289
1semA	58	3.90e+01	1ckaA	b.34.2.1	24544
1acf	125	3.93e+01	3nul	d.110.1.1	40882