# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1uheA	97	1.17e-01			
1t62A	166	5.58e-01			
4ubpB	126	9.21e-01	1ubpB	b.85.3.1	28345
1i7kA	179	1.44e+00	1u9aA	d.20.1.1	61889
1ov3A	138	1.54e+00		b.34.2.1	87451
				b.34.2.1	87452
1ed1A	135	2.76e+00	1hiwA	a.61.1.1	18130
1fjgQ	105	3.21e+00	1fjfQ	b.40.4.5	25352
1d9cA	121	4.27e+00	1d9cA	a.26.1.3	16901
1mv8A	436	4.42e+00		a.100.1.4	85128
				c.2.1.6	85129
				c.26.3.1	85130
1vie	62	4.68e+00	1vie	b.34.4.1	24592
1gmuA	143	5.46e+00		b.107.1.1	65335
				d.58.38.1	65336
1ng2A	193	6.96e+00		b.34.2.1	85660
				b.34.2.1	85661
5cytR	104	7.10e+00	1ycc	a.3.1.1	15878
1nnlA	225	7.17e+00		c.108.1.4	85906
1mjnA	179	7.33e+00		c.62.1.1	79210
1wad	112	7.43e+00	3cyr	a.138.1.1	19658
1lfaA	187	8.20e+00	1ido	c.62.1.1	34122
1plc	99	1.03e+01	1plc	b.6.1.1	22846
1viuA	203	1.16e+01		d.113.1.1	-10889
1g2qA	187	1.24e+01		c.61.1.1	65117
2cbp	96	1.38e+01	2cbp	b.6.1.1	22895
1cqyA	99	1.40e+01	1b9zA	b.3.1.1	22527
1hdlA	55	1.63e+01		unknown_sccs	65808
1g6oA	330	1.84e+01	1g6oA	c.37.1.11	32430
1afrA	345	1.95e+01	1afrA	a.25.1.2	16805
1v2bA	177	1.96e+01			
2eifA	136	2.10e+01	1bkb	b.34.5.2	24607
				b.40.4.5	25339
1j0sA	157	2.16e+01		b.42.1.2	-4016
1o54A	277	2.19e+01		c.66.1.13	-8095
1aiw	62	2.22e+01	1aiw	b.72.2.1	27808
1tuc	63	2.26e+01	1tuc	b.34.2.1	24492
1bypA	99	2.34e+01	1plc	b.6.1.1	22858
1qauA	112	2.34e+01	1qauA	b.36.1.1	24779
1ckaA	57	2.37e+01	1ckaA	b.34.2.1	24459
2occH	85	2.56e+01	2occH	a.51.1.1	17796
1v54H	85	2.68e+01		a.51.1.1	-979
3chy	128	2.82e+01	3chy	c.23.1.1	31038
1r4vA	171	3.29e+01		unknown_sccs	-1221
1iakA	199	3.29e+01	1iakA	b.1.1.2	21625
				d.19.1.1	38199
1ft5A	211	3.64e+01	1bvb	a.138.1.3	19681
1fzyA	149	3.64e+01		d.20.1.1	65072
1mfgA	95	3.81e+01		b.36.1.1	79043
1oq9A	363	3.87e+01		a.25.1.2	87257
1jbeA	128	3.87e+01	3chy	c.23.1.1	62845