# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1t62A	166	4.81e-02			
3fruA	269	2.59e+00	1agdA	b.1.1.2	20657
				d.19.1.1	38150
2tmkA	216	7.64e+00	3tmkA	c.37.1.1	31928
1d9cA	121	1.23e+01	1d9cA	a.26.1.3	16901
3tmkA	216	1.33e+01	3tmkA	c.37.1.1	31920
1at0	145	1.66e+01	1at0	b.86.1.1	28374
1i39A	225	1.69e+01	1ekeA	c.55.3.1	61585
1ubpB	122	2.10e+01	1ubpB	b.85.3.1	28346
1k6zA	141	2.19e+01		d.198.1.1	68247
1rfbA	119	2.47e+01	1d9cA	a.26.1.3	16905
2pna	104	2.48e+01	1qadA	d.93.1.1	40501
4ubpB	126	2.55e+01	1ubpB	b.85.3.1	28345
1jyaA	130	2.62e+01		d.198.1.1	67453
1bc8C	93	2.80e+01	1awcA	a.4.5.21	16168
1ft9A	222	2.81e+01	1ft9A	a.4.5.4	16107
				b.82.3.1	28131
1a62	130	2.87e+01	1a62	a.140.3.1	64708
				b.40.4.5	64709
1dptA	117	2.87e+01	1dptA	d.80.1.3	39862
1azeA	56	2.99e+01		b.34.2.1	24536
1a5r	103	3.11e+01	1a5r	d.15.1.1	37597
1cr5A	189	3.14e+01	1cr5A	b.52.2.3	26931
				d.31.1.1	38465
1a8i	842	3.16e+01	1a8i	c.87.1.4	35490
1lcjA	109	3.22e+01	1qadA	d.93.1.1	40414
1ov3A	138	3.42e+01		b.34.2.1	87451
				b.34.2.1	87452
1lkkA	105	3.82e+01	1lckA	d.93.1.1	40412