# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1t62A	166	4.73e-03			
3fruA	269	4.17e-01	1agdA	b.1.1.2	20657
				d.19.1.1	38150
1utiA	58	3.39e+00		b.34.2.1	-3552
1ckaA	57	3.59e+00	1ckaA	b.34.2.1	24459
1oebA	62	4.27e+00		b.34.2.1	86909
1gcqA	61	4.62e+00	1ckaA	b.34.2.1	60434
1aboA	62	5.31e+00	1bbzA	b.34.2.1	24474
1kamA	194	6.30e+00		c.26.1.3	72254
1l6oA	95	6.38e+00		b.36.1.1	84534
1bc8C	93	6.65e+00	1awcA	a.4.5.21	16168
1dptA	117	6.74e+00	1dptA	d.80.1.3	39862
1euvB	86	7.84e+00	1a5r	d.15.1.1	37598
1bbzA	58	8.19e+00	1bbzA	b.34.2.1	24477
1ng2A	193	8.45e+00		b.34.2.1	85660
				b.34.2.1	85661
1lm8B	118	8.93e+00		d.15.1.1	74033
1ov3A	138	9.22e+00		b.34.2.1	87451
				b.34.2.1	87452
3tmkA	216	1.05e+01	3tmkA	c.37.1.1	31920
1oruA	195	1.17e+01		unknown_sccs	-4390
1i0cA	60	1.21e+01	1aojA	b.34.2.1	61485
1u2fA	90	1.26e+01	1u2fA	d.58.7.1	39168
1ig5A	75	1.34e+01	4icb	a.39.1.1	62363
1vcbA	118	1.37e+01	1vcbA	d.15.1.1	37603
1dixA	208	1.40e+01	1bk7A	d.124.1.1	41122
1d6bA	42	1.41e+01	1b8wA	g.9.1.1	44594
1pprM	312	1.56e+01	1pprM	a.131.1.1	19502
				a.131.1.1	19503
1nu4A	97	1.68e+01		d.58.7.1	80731
1hdkA	141	1.75e+01		b.29.1.3	65807
1lcl	142	1.82e+01	1lcl	b.29.1.3	24216
1ddmA	135	1.91e+01	2nmbA	b.55.1.2	26993
1qcsA	211	2.03e+01	1qcsA	b.52.2.3	26927
				d.31.1.1	38461
1o7iA	119	2.10e+01		b.40.4.3	86642
1ri9A	102	2.23e+01		b.34.2.1	-3579
1fj2A	232	2.28e+01	1auoA	c.69.1.14	34720
1nd4A	264	2.61e+01		d.144.1.6	-11381
4icb	76	2.61e+01	4icb	a.39.1.1	17145
2kfnA	605	2.66e+01	1xwl	c.55.3.5	33682
				e.8.1.1	42975
1lj2C	28	2.66e+01			
1ytw	306	2.89e+01	1ytw	c.45.1.2	32689
1d2nA	272	2.99e+01	1d2nA	c.37.1.20	32428
1urnA	97	3.22e+01	1urnA	d.58.7.1	39153
1i07A	60	3.26e+01	1aojA	b.34.2.1	61477
1lyvA	306	3.30e+01		c.45.1.2	74348
1moq	368	3.61e+01	1moq	c.80.1.1	35302
1bkb	136	3.64e+01	1bkb	b.34.5.2	24609
				b.40.4.5	25341
1b16A	254	3.64e+01	1b16A	c.2.1.2	29875
1hbkA	94	3.66e+01	1aca	a.11.1.1	60887
1pq1A	196	3.71e+01		f.1.4.1	-12055
1gnyA	153	3.88e+01		b.18.1.11	65404
1i39A	225	3.93e+01	1ekeA	c.55.3.1	61585
1eljA	381	3.98e+01	4mbp	c.94.1.1	35791