# List of top-scoring protein chains for T0209.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1eg7A	557	1.28e+00	1eg7A	c.37.1.10	32241
1fpmA	557	1.38e+00		c.37.1.10	59945
1jvsA	400	4.85e+00		a.69.3.1	77187
				c.2.1.3	77188
				d.81.1.3	77189
1onoA	398	4.85e+00		a.69.3.1	87159
				c.2.1.3	87160
				d.81.1.3	87161
1ixsA	62	5.68e+00		a.5.1.1	76932
1uuzA	137	5.90e+00		d.233.1.1	-9478
1oynA	360	7.48e+00		a.125.1.1	87609
1gu6A	452	1.17e+01		a.138.1.3	70575
1egiA	147	1.26e+01	1eggA	d.169.1.1	42331
1nsf	273	1.35e+01	1d2nA	c.37.1.20	32429
1ihgA	370	1.39e+01	2cpl	a.118.8.1	62380
				b.62.1.1	62381
1q33A	292	1.47e+01		d.113.1.1	-10901
1dfvA	177	1.48e+01	1nglA	b.60.1.1	27144
1l6mA	180	1.49e+01		b.60.1.1	84531
1nglA	179	1.51e+01	1nglA	b.60.1.1	27146
1dst	228	1.54e+01	1a7s	b.47.1.2	26318
1e0uA	470	1.55e+01	1a49A	b.58.1.1	27072
				c.1.12.1	29300
				c.49.1.1	33154
1aohA	147	1.79e+01	1aohA	b.2.2.2	22401
1g1kA	143	1.80e+01	1aohA	b.2.2.2	22404
1qh2A	18	1.91e+01			
1lshB	319	1.93e+01		f.7.1.1	74245
1h3zA	109	1.95e+01		b.34.9.2	83471
1kn3A	183	1.97e+01		b.17.1.1	72764
1j1uA	306	2.01e+01		c.26.1.1	83980
1p5uB	149	2.03e+01		b.2.3.2	87810
1q1fA	151	2.07e+01			
1jmxB	349	2.17e+01		b.69.2.2	66906
1s67L	119	2.18e+01			
1fi8A	228	2.18e+01	5ptp	b.47.1.2	26374
1rw2A	152	2.21e+01		unknown_sccs	-1645
1p5vB	147	2.34e+01		b.2.3.2	87814
1pkyA	470	2.46e+01	1a49A	b.58.1.1	27068
				c.1.12.1	29296
				c.49.1.1	33150
1q2zA	120	2.54e+01		unknown_sccs	-1646
1e0tA	470	2.73e+01	1a49A	b.58.1.1	27064
				c.1.12.1	29292
				c.49.1.1	33146
1v9yA	167	2.78e+01			
1eoqA	96	2.79e+01	1d1dA	a.28.3.1	16959
1ixrA	191	2.81e+01		a.60.2.1	76925
				b.40.4.2	76926
1cb5A	453	3.24e+01	3gcb	d.3.1.1	37037
2ucz	165	3.26e+01	1u9aA	d.20.1.1	38330
2cb5A	453	3.28e+01	3gcb	d.3.1.1	37035
1nbaA	264	3.30e+01	1nbaA	unknown_sccs	31753
1s35A	214	3.32e+01		a.7.1.1	-391
				a.7.1.1	-392
1k1xA	659	3.43e+01		a.8.3.2	84279
				b.30.5.8	84280
				c.6.2.2	84281
1d1dA	262	3.57e+01	1d1dA	a.28.3.1	16958
				a.73.1.1	18335
1behA	187	3.62e+01	1a44	b.17.1.1	23700
1us7B	265	3.69e+01		unknown_sccs	-1518
1co6A	107	3.94e+01	1ycc	a.3.1.1	15894