# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1uc2A	481	8.50e-01		unknown_sccs	-11725
155c	135	1.29e+00	1ycc	a.3.1.1	15900
1k1xA	659	4.74e+00		a.8.3.2	84279
				b.30.5.8	84280
				c.6.2.2	84281
1jjyA	636	5.84e+00	1jjyA		
1su8A	636	6.07e+00		e.26.1.2	-12015
1p94A	76	6.66e+00		unknown_sccs	-916
1fc2C	58	8.32e+00	1fc2C	a.8.1.1	16345
1lqtA	456	9.03e+00		c.3.1.1	74198
				c.4.1.1	74199
1s0uA	408	9.73e+00		b.43.3.1	-4053
				b.44.1.1	-4061
				c.37.1.8	-7096
1dgnA	89	1.22e+01	1dgnA	a.77.1.3	18436
1pbtA	244	1.22e+01		unknown_sccs	-6866
1mtpA	323	1.25e+01		e.1.1.1	85107
1kk6A	209	1.29e+01		b.81.1.3	68657
1kuuA	202	1.39e+01		d.153.2.1	73019
1d0hA	469	1.55e+01	1a8d	b.29.1.6	24265
				b.42.4.2	25610
1diwA	441	1.59e+01	1a8d	b.29.1.6	24264
				b.42.4.2	25609
1si7A	369	1.66e+01		unknown_sccs	-10163
1jj2N	115	1.68e+01	1ffkL	c.12.1.1	63099
1s72O	116	1.71e+01			
1szwA	379	1.72e+01		unknown_sccs	-10164
1p5sA	203	1.81e+01		a.40.1.1	-900
1b37B	472	2.00e+01	1b37B	c.3.1.2	30390
				d.16.1.5	37954
1a8d	452	2.08e+01	1a8d	b.29.1.6	24262
				b.42.4.2	25607
1jpeA	151	2.13e+01		b.1.17.1	77146
1l6pA	125	2.27e+01		b.1.17.1	73626
1m6kA	251	2.35e+01		e.3.1.1	78695
1b37A	472	2.36e+01	1b37B	c.3.1.2	30389
				d.16.1.5	37953
1b5qA	472	2.36e+01	1b37B	c.3.1.2	30404
				d.16.1.5	37968
2btvA	901	2.38e+01	2btvA	e.28.1.1	43376
1n4oA	276	2.53e+01		e.3.1.1	-11764
1h0cA	392	2.54e+01		c.67.1.3	83424
2cpgA	45	2.57e+01	2cpgA	unknown_sccs	17455
1o7eA	276	2.75e+01		e.3.1.1	-11766
1vhiA	142	2.81e+01	1b3tA	d.58.8.1	39230
2dpmA	284	3.06e+01	2dpmA	c.66.1.28	34246
1nnwA	252	3.13e+01		d.159.1.5	80674
1em2A	229	3.35e+01	1em2A	d.129.3.2	41321
1dynA	125	3.43e+01	1dynA	b.55.1.1	26955
2dynA	122	3.45e+01	1dynA	b.55.1.1	26957
1ir3A	306	3.52e+01	1fmk	d.144.1.7	41702
1b3tA	147	3.76e+01	1b3tA	d.58.8.1	39228
1qgiA	259	3.87e+01	1qgiA	d.2.1.7	37001