# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1eggA	147	2.17e+00	1eggA	d.169.1.1	42333
1egiA	147	2.78e+00	1eggA	d.169.1.1	42331
1hcl	298	3.21e+00	1hcl	d.144.1.7	41593
1lmeA	176	5.24e+00		d.167.1.1	84629
1d1dA	262	5.51e+00	1d1dA	a.28.3.1	16958
				a.73.1.1	18335
1jvpP	298	5.91e+00		d.144.1.7	67371
1o6yA	299	6.05e+00		d.144.1.7	81106
1gz8A	299	6.61e+00		d.144.1.7	83405
1e1xA	299	7.37e+00	1hcl	d.144.1.7	59157
1ip9A	85	9.65e+00	1ip9A	d.15.2.2	62638
1rj9A	304	1.01e+01		a.24.13.1	-631
				c.37.1.10	-7129
4gr1	478	1.04e+01	3grs	c.3.1.5	30461
				c.3.1.5	30462
				d.87.1.1	40162
1v9yA	167	1.12e+01			
3grs	478	1.14e+01	3grs	c.3.1.5	30441
				c.3.1.5	30442
				d.87.1.1	40152
1oq1A	223	1.17e+01		unknown_sccs	-3455
1j3mA	129	1.98e+01			
1f3mC	297	2.07e+01	1hcl	d.144.1.7	41677
1mq4A	272	2.18e+01		d.144.1.7	-11349
1uk5A	111	2.22e+01		a.7.7.1	-395
1m1nB	522	2.65e+01		c.92.2.3	78418
2minB	522	2.68e+01	1qguB	c.92.2.3	35610
1nubA	229	2.91e+01	1sra	a.39.1.3	17191
				g.3.11.3	44330
				unknown_sccs	44715
3minB	522	2.99e+01	1qguB	c.92.2.3	35606
1ncs	47	2.99e+01	1ncs	g.37.1.1	45040
1o6lA	337	3.11e+01		d.144.1.7	81092
1ab7	89	3.16e+01	1ay7B	c.9.1.1	30835
1edzA	320	3.24e+01	1ee9A	c.2.1.7	30287
				c.58.1.2	33935
2cb5A	453	3.25e+01	3gcb	d.3.1.1	37035
1mwqA	101	3.43e+01		unknown_sccs	-9962
1co6A	107	3.48e+01	1ycc	a.3.1.1	15894
1draA	159	3.50e+01	1vdrA	c.71.1.1	34831
1q8yA	373	3.66e+01		d.144.1.7	-11319
1cot	129	3.87e+01	1ycc	a.3.1.1	15899
1phk	298	3.92e+01	1cdkA	d.144.1.7	41635
1ee9A	320	3.92e+01	1ee9A	c.2.1.7	30288
				c.58.1.2	33936
1v6fA	151	3.97e+01