# List of top-scoring protein chains for T0209.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g1kA 143 2.61e+00 1aohA b.2.2.2 22404 1eg7A 557 4.93e+00 1eg7A c.37.1.10 32241 1fpmA 557 5.11e+00 c.37.1.10 59945 1onoA 398 5.90e+00 a.69.3.1 87159 c.2.1.3 87160 d.81.1.3 87161 1jvsA 400 5.91e+00 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1cb5A 453 6.20e+00 3gcb d.3.1.1 37037 2cb5A 453 6.44e+00 3gcb d.3.1.1 37035 1gu6A 452 7.34e+00 a.138.1.3 70575 1j1uA 306 7.53e+00 c.26.1.1 83980 1ccr 112 9.87e+00 1ycc a.3.1.1 15877 1nsf 273 1.03e+01 1d2nA c.37.1.20 32429 1pz1A 333 1.23e+01 c.1.7.1 -5255 1ixsA 62 1.25e+01 a.5.1.1 76932 1uuzA 137 1.33e+01 d.233.1.1 -9478 1ihgA 370 1.35e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1dst 228 1.38e+01 1a7s b.47.1.2 26318 1jmxB 349 1.40e+01 b.69.2.2 66906 1fi8A 228 1.60e+01 5ptp b.47.1.2 26374 1p5uB 149 1.61e+01 b.2.3.2 87810 2ucz 165 1.69e+01 1u9aA d.20.1.1 38330 1abbA 828 1.70e+01 1a8i c.87.1.4 35536 1c50A 830 1.75e+01 1a8i c.87.1.4 35512 1h5uA 842 1.76e+01 1a8i c.87.1.4 60655 1lwnA 842 1.76e+01 c.87.1.4 74307 1rypK 198 1.82e+01 d.153.1.4 41879 1p5vB 147 1.83e+01 b.2.3.2 87814 1noj 842 1.93e+01 1a8i c.87.1.4 35479 1rw2A 152 1.97e+01 unknown_sccs -1645 1egiA 147 1.97e+01 1eggA d.169.1.1 42331 1lshB 319 2.02e+01 f.7.1.1 74245 1v86A 95 2.06e+01 1scjB 71 2.25e+01 1scjB d.58.3.2 39069 1nbaA 264 2.32e+01 1nbaA unknown_sccs 31753 1q2zA 120 2.43e+01 unknown_sccs -1646 1tmo 829 2.58e+01 1dmr b.52.2.2 26919 c.81.1.1 35327 1a8p 258 2.58e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1us7B 265 2.61e+01 unknown_sccs -1518 1l2hA 153 2.73e+01 b.42.1.2 77655 1e0uA 470 2.75e+01 1a49A b.58.1.1 27072 c.1.12.1 29300 c.49.1.1 33154 1flkA 228 2.90e+01 1d0aB b.8.1.1 23262 h.1.2.1 45469 1s0lA 153 2.91e+01 b.42.1.2 -4010 1k1xA 659 2.94e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1fc0A 846 2.94e+01 1a8i c.87.1.4 35473 1l5sA 847 2.94e+01 c.87.1.4 77716 1qh2A 18 2.96e+01 1l0aA 192 2.98e+01 b.8.1.1 73389 h.1.2.1 73390 1spbP 78 3.12e+01 1scjB d.58.3.2 39068 1j27A 102 3.20e+01 unknown_sccs -10116 1ncs 47 3.34e+01 1ncs g.37.1.1 45040 1h3zA 109 3.38e+01 b.34.9.2 83471 1co6A 107 3.65e+01 1ycc a.3.1.1 15894 1oynA 360 3.79e+01 a.125.1.1 87609 1dfvA 177 3.81e+01 1nglA b.60.1.1 27144 1l6mA 180 3.83e+01 b.60.1.1 84531 1nglA 179 3.91e+01 1nglA b.60.1.1 27146 41bi 153 3.96e+01 2i1b b.42.1.2 25545 2i1b 153 3.96e+01 2i1b b.42.1.2 25538 1q33A 292 3.97e+01 d.113.1.1 -10901 1fqiA 147 3.97e+01 1agrE a.91.1.1 18542 1hib 153 3.99e+01 2i1b b.42.1.2 25544