# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6kA 251 1.36e+00 e.3.1.1 78695 1k1xA 659 2.80e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1js8A 394 4.05e+00 a.86.1.1 67219 b.112.1.1 67220 1obdA 306 6.27e+00 d.143.1.1 86767 1s0uA 408 6.37e+00 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1o6uA 403 6.89e+00 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 1aisA 182 7.24e+00 1ytbA d.129.1.1 41288 d.129.1.1 41289 1a9xA 1058 7.96e+00 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1l1oC 181 8.02e+00 b.40.4.3 73480 1aol 228 9.19e+00 1aol b.20.1.1 23840 1su8A 636 1.04e+01 e.26.1.2 -12015 1dynA 125 1.05e+01 1dynA b.55.1.1 26955 1crb 134 1.07e+01 1hmt b.60.1.2 27220 1f35A 162 1.14e+01 1f35A b.94.1.1 59628 1omiA 248 1.16e+01 a.4.5.4 87079 b.82.3.3 87080 1p9eA 331 1.34e+01 1jyaA 130 1.48e+01 d.198.1.1 67453 2hgsA 474 1.48e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1a8d 452 1.53e+01 1a8d b.29.1.6 24262 b.42.4.2 25607 1lfpA 249 1.56e+01 e.39.1.1 73885 1o5oA 221 1.59e+01 c.61.1.1 -7954 1on0A 158 1.72e+01 d.108.1.1 87095 1j57A 143 1.77e+01 d.221.1.1 77079 1mn8A 100 1.96e+01 a.61.1.6 79318 1te5A 257 1.99e+01 1vhtA 218 2.08e+01 c.37.1.1 -7004 1c0pA 363 2.12e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1kzfA 230 2.23e+01 d.108.1.3 73354 1ukkA 142 2.31e+01 d.227.1.1 -11206 1ewnA 219 2.39e+01 1bnkA b.46.1.2 25762 1hw7A 255 2.40e+01 1i7fA d.193.1.1 61297 1c9oA 66 2.42e+01 1mjc b.40.4.5 25325 1p94A 76 2.46e+01 unknown_sccs -916 2cpgA 45 2.49e+01 2cpgA unknown_sccs 17455 1tia 279 2.51e+01 3tgl c.69.1.17 34737 1nnwA 252 2.54e+01 d.159.1.5 80674 1eijA 80 2.54e+01 1eijA a.5.6.1 16298 1p5zB 263 2.55e+01 c.37.1.1 87815 1kxlA 199 2.61e+01 b.40.4.3 73155 1p5sA 203 2.66e+01 a.40.1.1 -900 1mveA 243 2.74e+01 b.29.1.2 85140 3ygsP 97 2.91e+01 3ygsP a.77.1.3 18435 1jjyA 636 2.91e+01 1jjyA 1n3bA 216 2.97e+01 c.37.1.1 79959 2btvA 901 3.00e+01 2btvA e.28.1.1 43376 1m6iA 493 3.01e+01 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 1o7fA 469 3.05e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1kutA 230 3.19e+01 d.143.1.1 73017 1b77A 228 3.20e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1kllA 130 3.24e+01 d.32.1.2 72720 1r48A 35 3.27e+01 unknown_sccs -13006 1s8fA 177 3.39e+01 1mtpA 323 3.42e+01 e.1.1.1 85107 1nt2B 258 3.42e+01 a.183.1.1 86150 1bebA 162 3.43e+01 1bebA b.60.1.1 27115 1eca 136 3.44e+01 1flp a.1.1.2 15209 1o8bA 219 3.49e+01 unknown_sccs 81180 d.58.40.1 81181 1a48 306 3.71e+01 1a48 d.143.1.1 41590 1aohA 147 3.82e+01 1aohA b.2.2.2 22401 1szwA 379 3.90e+01 unknown_sccs -10164