# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1k1xA	659	9.67e-01		a.8.3.2	84279
				b.30.5.8	84280
				c.6.2.2	84281
1mtpA	323	1.92e+00		e.1.1.1	85107
1uc2A	481	3.29e+00		unknown_sccs	-11725
1m6kA	251	3.70e+00		e.3.1.1	78695
1s0uA	408	4.48e+00		b.43.3.1	-4053
				b.44.1.1	-4061
				c.37.1.8	-7096
1c0pA	363	7.76e+00	1an9A	c.4.1.2	30647
				d.16.1.3	37934
1a9xA	1058	7.80e+00		a.92.1.1	18550
				c.24.1.1	31479
				c.30.1.1	31657
				c.30.1.1	31658
				d.142.1.2	41502
				d.142.1.2	41503
2cpgA	45	1.07e+01	2cpgA	unknown_sccs	17455
1e9rA	437	1.14e+01		c.37.1.11	64827
1kuuA	202	1.20e+01		d.153.2.1	73019
1o8bA	219	1.30e+01		unknown_sccs	81180
				d.58.40.1	81181
1obdA	306	1.50e+01		d.143.1.1	86767
1su8A	636	1.83e+01		e.26.1.2	-12015
1lqtA	456	2.20e+01		c.3.1.1	74198
				c.4.1.1	74199
1p5vA	235	2.29e+01		b.1.11.1	87812
				b.7.2.1	87813
1f35A	162	2.44e+01	1f35A	b.94.1.1	59628
1p94A	76	2.48e+01		unknown_sccs	-916
1o7fA	469	2.56e+01		a.4.5.31	81131
				b.82.3.2	81132
				b.82.3.2	81133
1jjyA	636	2.63e+01	1jjyA		
1r48A	35	2.85e+01		unknown_sccs	-13006
1p5sA	203	2.94e+01		a.40.1.1	-900
1oo0A	147	2.98e+01		d.232.1.1	87182
1kxlA	199	3.09e+01		b.40.4.3	73155
1aisA	182	3.20e+01	1ytbA	d.129.1.1	41288
				d.129.1.1	41289
1s72O	116	3.23e+01			
1j6rA	214	3.25e+01		d.173.1.2	71598
1eca	136	3.28e+01	1flp	a.1.1.2	15209
1em2A	229	3.31e+01	1em2A	d.129.3.2	41321
1hw7A	255	3.54e+01	1i7fA	d.193.1.1	61297
1dynA	125	3.79e+01	1dynA	b.55.1.1	26955
1dwkA	156	3.96e+01	1dw9A	a.35.1.4	17075
				d.72.1.1	39606