# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1c0pA	363	2.11e+00	1an9A	c.4.1.2	30647
				d.16.1.3	37934
1k1xA	659	2.38e+00		a.8.3.2	84279
				b.30.5.8	84280
				c.6.2.2	84281
1su8A	636	5.92e+00		e.26.1.2	-12015
1a9xA	1058	6.47e+00		a.92.1.1	18550
				c.24.1.1	31479
				c.30.1.1	31657
				c.30.1.1	31658
				d.142.1.2	41502
				d.142.1.2	41503
1aisA	182	6.78e+00	1ytbA	d.129.1.1	41288
				d.129.1.1	41289
1uc2A	481	8.67e+00		unknown_sccs	-11725
1jjyA	636	8.78e+00	1jjyA		
1p5sA	203	9.17e+00		a.40.1.1	-900
1pbtA	244	9.83e+00		unknown_sccs	-6866
1s0uA	408	1.10e+01		b.43.3.1	-4053
				b.44.1.1	-4061
				c.37.1.8	-7096
1nnwA	252	1.20e+01		d.159.1.5	80674
2cpgA	45	1.28e+01	2cpgA	unknown_sccs	17455
1m6kA	251	1.43e+01		e.3.1.1	78695
1lqtA	456	1.58e+01		c.3.1.1	74198
				c.4.1.1	74199
1s72O	116	1.61e+01			
1hw7A	255	1.64e+01	1i7fA	d.193.1.1	61297
1mtpA	323	1.64e+01		e.1.1.1	85107
1f35A	162	1.79e+01	1f35A	b.94.1.1	59628
1crb	134	1.80e+01	1hmt	b.60.1.2	27220
1kuuA	202	1.87e+01		d.153.2.1	73019
1j6rA	214	1.89e+01		d.173.1.2	71598
1p2xA	159	1.95e+01			
1szwA	379	2.38e+01		unknown_sccs	-10164
1kc6A	257	2.42e+01		c.52.1.19	68419
1dwkA	156	2.58e+01	1dw9A	a.35.1.4	17075
				d.72.1.1	39606
1p94A	76	2.59e+01		unknown_sccs	-916
1eijA	80	2.90e+01	1eijA	a.5.6.1	16298
1o7fA	469	3.01e+01		a.4.5.31	81131
				b.82.3.2	81132
				b.82.3.2	81133
1kxlA	199	3.07e+01		b.40.4.3	73155
1p9eA	331	3.08e+01			
1obdA	306	3.10e+01		d.143.1.1	86767
2btvA	901	3.23e+01	2btvA	e.28.1.1	43376
3ygsP	97	3.26e+01	3ygsP	a.77.1.3	18435
1lfpA	249	3.50e+01		e.39.1.1	73885
1eca	136	3.61e+01	1flp	a.1.1.2	15209
1cvl	319	3.65e+01	1cvl	c.69.1.18	34786
1jvsA	400	3.68e+01		a.69.3.1	77187
				c.2.1.3	77188
				d.81.1.3	77189
1em2A	229	3.69e+01	1em2A	d.129.3.2	41321
1nvpD	108	3.92e+01		a.32.1.1	-782
				b.56.1.1	-4386