# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhnA	424	9.03e-01		b.29.1.12	70060
				b.104.1.1	66722
1n9pA	207	1.47e+00		b.1.18.16	80343
1fzvA	132	2.91e+00	1vpfA	g.17.1.1	60159
1bpr	191	3.20e+00	1dkzA	unknown_sccs	43319
1m42A	102	3.93e+00		b.1.18.17	78597
1bteA	97	3.96e+00	1bteA	g.7.1.3	44463
1s3iA	310	4.22e+00		b.46.1.1	-4111
				c.65.1.1	-8042
1hxn	219	5.16e+00	1hxn	b.66.1.1	27529
2pcfB	250	7.96e+00	1hcz	i.4.1.1	45911
1qhuA	460	8.25e+00	1qhuA	b.66.1.1	27530
				b.66.1.1	27531
1ew3A	159	8.32e+00	1mup	b.60.1.1	27114
1ixmA	192	8.45e+00	1ixmA	d.123.1.1	41114
1odkA	235	8.45e+00		c.56.2.1	86863
1rz3A	201	8.64e+00		c.37.1.6	-7048
1sfp	114	9.22e+00	1sfp	b.23.1.1	23895
1i74A	309	9.30e+00	1i74A	c.107.1.1	61867
1dkxA	219	1.03e+01	1dkzA	unknown_sccs	-446
				unknown_sccs	-3061
1dkzA	219	1.04e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1qubA	319	1.07e+01	1qubA	g.18.1.1	44863
				g.18.1.1	44864
				g.18.1.1	44865
				g.18.1.1	44866
				g.18.1.1	44867
1dgrC	178	1.31e+01	1dgwA	b.82.1.2	28100
1i1jA	108	1.39e+01	1i1jA	b.34.2.1	61531
1m6uA	272	1.53e+01		b.2.5.7	78706
1cauA	181	1.67e+01	1dgwA	b.82.1.2	28102
1umwA	237	1.73e+01		unknown_sccs	-9455
				unknown_sccs	-9456
1bt4A	362	1.74e+01	1bjnA	c.67.1.4	34468
1itxA	419	1.81e+01		c.1.8.5	71425
				d.26.3.1	71426
1sixA	174	1.85e+01		b.85.4.1	-5030
1go2A	304	1.90e+01		b.43.4.2	76243
				c.25.1.1	76244
1bndA	119	2.03e+01	1bndA	g.17.1.3	44793
1dgwA	178	2.13e+01	1dgwA	b.82.1.2	28090
1obwA	175	2.23e+01	2prd	b.40.5.1	25416
1hjdA	101	2.28e+01		b.34.2.1	65846
1hyxL	216	2.35e+01	8fabA	b.1.1.1	20166
				b.1.1.2	21190
1i40A	175	2.51e+01		b.40.5.1	66024
2cavA	445	2.63e+01	1dgwA	b.82.1.2	28094
				b.82.1.2	28095
1flrL	219	2.70e+01	8fabA	b.1.1.1	19904
				b.1.1.2	20998
1cs8A	316	2.93e+01	1cs8A	d.3.1.1	37065
1jm1A	204	3.34e+01		b.33.1.1	71745
1qexA	288	3.35e+01	1qexA	b.32.1.1	24425
1sftA	388	3.39e+01	1bd0A	b.49.2.2	26482
				c.1.6.1	28644
1p35A	299	3.44e+01	1p35A	b.28.1.1	23925
1ixmB	192	3.62e+01	1ixmA	d.123.1.1	41115
1jzuA	157	3.64e+01		b.60.1.1	84271
1vppV	102	3.69e+01	1vpfA	g.17.1.1	44753
1iznA	286	3.75e+01		e.43.1.1	83847
1ngzB	220	3.83e+01		b.1.1.1	80502
				b.1.1.2	80503