# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rz3A	201	1.32e+00		c.37.1.6	-7048
1jhnA	424	2.05e+00		b.29.1.12	70060
				b.104.1.1	66722
1fzvA	132	2.54e+00	1vpfA	g.17.1.1	60159
1n9pA	207	4.87e+00		b.1.18.16	80343
1sixA	174	5.15e+00		b.85.4.1	-5030
1o54A	277	5.82e+00		c.66.1.13	-8095
1m42A	102	6.22e+00		b.1.18.17	78597
1mq7A	154	9.75e+00		b.85.4.1	79404
1s3iA	310	9.96e+00		b.46.1.1	-4111
				c.65.1.1	-8042
1ux6A	350	1.09e+01		unknown_sccs	-3451
				unknown_sccs	-12886
1bt4A	362	1.23e+01	1bjnA	c.67.1.4	34468
1cq3A	233	1.28e+01	1cq3A	b.27.1.1	23923
1dkxA	219	1.33e+01	1dkzA	unknown_sccs	-446
				unknown_sccs	-3061
1bpr	191	1.71e+01	1dkzA	unknown_sccs	43319
1dkzA	219	1.74e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1i40A	175	1.75e+01		b.40.5.1	66024
1ew3A	159	1.82e+01	1mup	b.60.1.1	27114
1jpyB	137	1.83e+01		g.17.1.6	67066
12e8L	214	1.86e+01	8fabA	b.1.1.1	20268
				b.1.1.2	21268
1cs8A	316	1.98e+01	1cs8A	d.3.1.1	37065
1obwA	175	2.09e+01	2prd	b.40.5.1	25416
1dgwX	79	2.09e+01	1caxB	b.82.1.2	28091
1ixmA	192	2.15e+01	1ixmA	d.123.1.1	41114
1sfp	114	2.15e+01	1sfp	b.23.1.1	23895
1pdgA	109	2.25e+01	1pdgA	g.17.1.1	44748
1iznB	277	2.45e+01		e.43.1.2	83848
1dgrV	79	2.70e+01	1caxB	b.82.1.2	28099
1hxn	219	2.74e+01	1hxn	b.66.1.1	27529
2pcfB	250	2.78e+01	1hcz	i.4.1.1	45911
1r7aA	504	2.81e+01		b.71.1.1	-4664
				c.1.8.1	-5283
1qhuA	460	2.90e+01	1qhuA	b.66.1.1	27530
				b.66.1.1	27531
1h0bA	256	3.02e+01		b.29.1.11	83422
1bteA	97	3.12e+01	1bteA	g.7.1.3	44463
1pvtA	238	3.20e+01		c.74.1.1	-8444
1ipwA	175	3.24e+01	2prd	b.40.5.1	25427
1o5oA	221	3.25e+01		c.61.1.1	-7954
1ixmB	192	3.35e+01	1ixmA	d.123.1.1	41115
1mexL	213	3.36e+01		b.1.1.1	-2124
				b.1.1.2	-2352
1i74A	309	3.41e+01	1i74A	c.107.1.1	61867
1iakB	185	3.45e+01	1iakB	b.1.1.2	21626
				d.19.1.1	38200
1gqpA	221	3.48e+01		b.18.1.9	70372
1bix	287	3.65e+01	1bix	d.151.1.1	41781
1hyxL	216	3.67e+01	8fabA	b.1.1.1	20166
				b.1.1.2	21190