# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jhnA	424	1.72e+00		b.29.1.12	70060
				b.104.1.1	66722
1hxn	219	2.56e+00	1hxn	b.66.1.1	27529
1rz3A	201	3.57e+00		c.37.1.6	-7048
1i1jA	108	3.64e+00	1i1jA	b.34.2.1	61531
1dpjA	329	4.46e+00	1smrA	b.50.1.2	26828
1dgwA	178	4.50e+00	1dgwA	b.82.1.2	28090
1fzvA	132	4.58e+00	1vpfA	g.17.1.1	60159
1bteA	97	1.11e+01	1bteA	g.7.1.3	44463
1s3iA	310	1.24e+01		b.46.1.1	-4111
				c.65.1.1	-8042
1dkzA	219	1.36e+01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1an9A	340	1.36e+01	1an9A	c.4.1.2	30617
				d.16.1.3	37904
1qtqA	553	1.61e+01	1gtrA	b.53.1.2	26940
				c.26.1.1	31579
1o4tA	133	1.63e+01		b.82.1.9	86622
1aa8A	347	2.06e+01	1an9A		
1h0bA	256	2.29e+01		b.29.1.11	83422
1rzhH	260	2.29e+01		b.41.1.1	-3979
				f.23.10.1	-12092
1n9pA	207	2.30e+01		b.1.18.16	80343
1uldA	150	2.30e+01		b.29.1.3	-3423
1ihjA	98	2.69e+01	1pdr	b.36.1.1	62382
1sv6A	269	2.77e+01			
1i74A	309	2.79e+01	1i74A	c.107.1.1	61867
2prd	174	2.89e+01	2prd	b.40.5.1	25435
1i40A	175	2.91e+01		b.40.5.1	66024
1obwA	175	2.98e+01	2prd	b.40.5.1	25416
1ixmA	192	3.14e+01	1ixmA	d.123.1.1	41114
1kwsA	261	3.22e+01		c.68.1.7	73083
1sek	378	3.28e+01	1sek	e.1.1.1	42675
1of4A	179	3.58e+01		b.18.1.18	86932
1iw7C	1119	3.59e+01		e.29.1.1	71474
1f8eA	388	3.95e+01	2qwc	b.68.1.1	59694